PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0429s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 329aa MW: 37289.9 Da PI: 6.9642

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0429s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.6	1.2e-18	131	220	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h+ k e+ ++tlede+g++ k+ ++++ l++GW++F+ +++L +gD +vF+l++ ++f Kalax.0429s0018.1.p 131 FVKPMLQSHVTGGFWLGLPQRFCKAHMPK--EDEMMTLEDEDGNESPSKYLADRTG----LSGGWRGFALDHELVDGDALVFQLIRATKF 214 89**********************855..5569***********555555....***********************98888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Kalax.0429s0018.1.p 215 --KVYIIR 220 ..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.65E-25	124	222	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.6E-23	124	222	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.54E-28	129	220	No hit	No description
SMART	SM01019	7.3E-24	131	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.111	131	222	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-17	131	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MVASATSNYE ELRRQRMEEN KKRMEELNLL NLSNSLSTAT PKPSPVKKQW KPKSARKEVD 60 LSAVRRSSRT ADKPQPDYKE GMIEPLGSLR RGPYRRRDLL NRVYASDEFR MYAVQRAEQL 120 ESELGSEFPC FVKPMLQSHV TGGFWLGLPQ RFCKAHMPKE DEMMTLEDED GNESPSKYLA 180 DRTGLSGGWR GFALDHELVD GDALVFQLIR ATKFKVYIIR VNEHENGDEN NEDVADEDGN 240 DVVLLKPVPK AKPLKVAKPL KVAESSPGTR RSRRKKSTYK DEDDDDDDDD PGADDDVFLV 300 KVPETESGEL TDPSPGTRRS KRKKSSRK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	323	RRSKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647760.1	1e-106	PREDICTED: B3 domain-containing protein At3g19184 isoform X1
Swissprot	Q1G3M3	1e-87	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	F6HQC1	1e-105	F6HQC1_VITVI; Uncharacterized protein
STRING	VIT_03s0063g00620.t01	1e-106	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-80	B3 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0429s0018.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]