PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0433s0017.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 351aa MW: 39809.9 Da PI: 7.1683

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0433s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.3e-06	188	207	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+Cp C ksFsr nL+ H+ Kalax.0433s0017.1.p 188 YSCPVCFKSFSRYNNLQMHM 207 99*****************9 PP
2	zf-C2H2	14.9	7.5e-05	272	294	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C ksF k + ++H +++ Kalax.0433s0017.1.p 272 FTCRKCQKSFAVKGDWRTHEKNC 294 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.3E-5	180	210	No hit	No description
PROSITE profile	PS50157	10.596	188	215	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.3E-7	188	207	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.13	188	210	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	190	210	IPR007087	Zinc finger, C2H2
SMART	SM00355	40	272	292	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MLFFLNLYLA YLSFLTSDSP KTSLLIMKDL LSPNRSVTKN GLSYFNFIPL NPNPNPFPRT 60 LPLLNNFEPP HSSQAPTPMD EDYDDSFCNR GRSEGGSSVA PLSLNIGLPD DETYSSTVVS 120 PSSSGSKLLE LQKNLFGDQS FREEGEEDED HDNEMGFLQC ASLKNLEKSV TQYWIPTPTQ 180 ILIGPTQYSC PVCFKSFSRY NNLQMHMWGH GSQYRKGLES LRVIQPRAML RLPCYCCSQS 240 CKHHIDHPKS RPLKDFRTLQ THYKRKHGTK TFTCRKCQKS FAVKGDWRTH EKNCGKFWYC 300 TCGSDFKHKR SLKDHIRAFG DDGQVGHAAI GIEDDLEHDG DDHGCVIESE *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MLFFLNLYLA YLSFLTSDSP KTSLLIMKDL LSPNRSVTKN GLSYFNFIPL NPNPNPFPRT  60
LPLLNNFEPP HSSQAPTPMD EDYDDSFCNR GRSEGGSSVA PLSLNIGLPD DETYSSTVVS  120
PSSSGSKLLE LQKNLFGDQS FREEGEEDED HDNEMGFLQC ASLKNLEKSV TQYWIPTPTQ  180
ILIGPTQYSC PVCFKSFSRY NNLQMHMWGH GSQYRKGLES LRVIQPRAML RLPCYCCSQS  240
CKHHIDHPKS RPLKDFRTLQ THYKRKHGTK TFTCRKCQKS FAVKGDWRTH EKNCGKFWYC  300
TCGSDFKHKR SLKDHIRAFG DDGQVGHAAI GIEDDLEHDG DDHGCVIESE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007052543.2	1e-102	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	6e-96	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2R6RD16	1e-102	A0A2R6RD16_ACTCH; Zinc finger protein
STRING	EOX96700	1e-101	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	5e-94	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0433s0017.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]