PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0437s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 298aa    MW: 31923.8 Da    PI: 4.5529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0437s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012272294223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+k+F++   L++H +  H
  Kalax.0437s0005.1.p 272 TCGSCSKTFNSDKALESHSKAkH 294
                          7*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.263271297IPR007087Zinc finger, C2H2
PROSITE patternPS000280273294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFWGVEVKA GQPLKVSPGE GKVIHLSQAS IGESKKGKDE SVPVYVKIGE QKLVIGTLSA  60
DKHPQIQYDV VFEKDFELSH NWKNGSIFFC GYRTQNPGDD EGFSGDEFDS DSEDEELPIE  120
NGKPELVNVA AAAKPAAADK AKVSVQEAAK EAKADSDEDS SDDEDFSDSD DEDISDDGDE  180
KMGEGDSDDE EDSSEEDEKT PTPKKENKKR PTEPENKTPV PSKKAKIATP QKTDGKKVAA  240
HTATPHPAKQ AGKTPKSENP KTPATAGKSS VTCGSCSKTF NSDKALESHS KAKHAAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890901.12e-83histone deacetylase HDT1-like
TrEMBLA0A0V0HRY46e-79A0A0V0HRY4_SOLCH; Putative histone deacetylase HDT1-like
STRINGPGSC0003DMT4000216442e-79(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-38histone deacetylase 3