PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0437s0048.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 130aa    MW: 14950.3 Da    PI: 5.0217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0437s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-143980144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                         +g+W+teEd +l d vk  G g W  Ia++++  Rt k+c++rw
  Kalax.0437s0048.1.p 39 KGPWSTEEDHRLEDFVKGNGEGKWGMIANELN--RTTKSCRLRW 80
                         79*****************************7..********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1653488IPR017930Myb domain
SuperFamilySSF466891.87E-133592IPR009057Homeodomain-like
SMARTSM007174.9E-83886IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-153886IPR009057Homeodomain-like
PfamPF002496.8E-123980IPR001005SANT/Myb domain
CDDcd001678.11E-84180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSEINNQSDP NLKADSTIDL NQNFEKDQDT DDIEVSYKKG PWSTEEDHRL EDFVKGNGEG  60
KWGMIANELN RTTKSCRLRW ICQLCPHINH HRSTSSGCVK KNDKYKWLNT ESDFEQTHDA  120
GEQEGFNRS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.18e-14myb domain protein 78