PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0438s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 227aa    MW: 25830.7 Da    PI: 4.4865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0438s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-203184356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         k++++ ++q+++Le+ Fe +++++ e++ +LA +lgL+ rqV +WFqNrRa++k
  Kalax.0438s0034.1.p 31 KKRRLRADQVKALERSFEAESKLDPERKVQLAIELGLDPRQVAIWFQNRRARWK 84
                         4567899**********************************************9 PP
2HD-ZIP_I/II126.51.2e-4031121292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl ++qvk+LE+sFe+e+kL+perKv+la eLgl+prqva+WFqnrRAR+ktkqlE+d+++L++ayd lk++ +++++++e+L +++
  Kalax.0438s0034.1.p  31 KKRRLRADQVKALERSFEAESKLDPERKVQLAIELGLDPRQVAIWFQNRRARWKTKQLEHDFNSLQSAYDDLKQNYDAVKRDNENLIKQI 120
                          9*************************************************************************************9998 PP

          HD-ZIP_I/II  92 k 92 
                           
  Kalax.0438s0034.1.p 121 G 121
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-192588IPR009057Homeodomain-like
PROSITE profilePS5007117.072686IPR001356Homeobox domain
SMARTSM003895.2E-192990IPR001356Homeobox domain
CDDcd000863.91E-173187No hitNo description
PfamPF000461.3E-173184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-203393IPR009057Homeodomain-like
PRINTSPR000311.2E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000311.2E-56682IPR000047Helix-turn-helix motif
PfamPF021833.8E-1486127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MKKSGSKREL DSDVAFEEEE ECVEGSGQPD KKRRLRADQV KALERSFEAE SKLDPERKVQ  60
LAIELGLDPR QVAIWFQNRR ARWKTKQLEH DFNSLQSAYD DLKQNYDAVK RDNENLIKQI  120
GEMKQKMIKR ESGLSDKKEM MVCEGRFDQS FNYETTFYSN VNVVSSDSAT SGVQSEENSA  180
QNGVVSSCGL PGSEEDAVMW PAATYSFLVD EDAPPMFDWC CPDPWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ940J14e-40ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
STRINGEOX920161e-45(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-42homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]