PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0442s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 121aa MW: 14111 Da PI: 9.8102

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0442s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.2	1e-14	6	50	7	51
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r++++NRe+ArrsR RK++ ++eL v L +eN+aL ++ ++ Kalax.0442s0013.1.p 6 QRKMISNRESARRSRMRKQKHLDELWSQVTRLRTENHALLDKFNH 50 89*************************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-10	2	64	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.2E-12	6	50	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.6E-13	6	76	No hit	No description
PROSITE profile	PS50217	9.209	6	65	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.77E-16	6	49	No hit	No description
SuperFamily	SSF57959	8.75E-13	6	54	No hit	No description
PROSITE pattern	PS00036	0	7	22	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
RLTTWQRKMI SNRESARRSR MRKQKHLDEL WSQVTRLRTE NHALLDKFNH VFESHSQVVQ 60 ENVKLKDEVS QLRKMVADLQ ITSPETFLRE LREMPCITDN AGEASPKSNY SISSSIDLLD 120 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	23	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530800.1	2e-44	basic leucine zipper 43
Swissprot	Q9FMC2	2e-26	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	B9SXT1	4e-43	B9SXT1_RICCO; Ocs element-binding factor, putative
STRING	XP_002530800.1	7e-44	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-34	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Kalax.0442s0013.1.p

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]