PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0442s0022.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 188aa MW: 19696.6 Da PI: 9.3897

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0442s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.7	8.2e-43	18	118	1	100
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C+kd C++apyfpae+p kfa vh++FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ Kalax.0442s0022.1.p 18 PCAACKLLRRRCSKDeCAFAPYFPAEDPVKFATVHRVFGASNVNKMLQDLPAQHRGDAVSSLVYEANARVRDPVYGCVGAISALQQQIHV 107 7*********9977********************************************************************** PP DUF260 90 lkaelallkee 100 l+a+lal+++e Kalax.0442s0022.1.p 108 LQAQLALAQAE 118 ****99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.773	17	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-42	18	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSAAAPLKKG VPAVVATPCA ACKLLRRRCS KDECAFAPYF PAEDPVKFAT VHRVFGASNV 60 NKMLQDLPAQ HRGDAVSSLV YEANARVRDP VYGCVGAISA LQQQIHVLQA QLALAQAEVL 120 HLRSLSASQA AAALRKTCDV ITTPTAAVHH PHGSALVPSS TSSLPASKLA ASDTAKSSFL 180 AADRSWW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	18	120	11	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	18	120	11	112	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667079.1	4e-62	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SA51	1e-55	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	A0A0J8DXN7	1e-60	A0A0J8DXN7_BETVU; Uncharacterized protein
STRING	XP_010667079.1	2e-61	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-43	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Kalax.0442s0022.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]