PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0446s0003.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family BBR-BPC
Protein Properties Length: 304aa    MW: 33691.4 Da    PI: 10.6658
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0446s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind293.39.9e-90730331301
            GAGA_bind  31 siaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla......salpvgvqvlsgtksidslqql 114
                          ++++r++++rern+a++e k+a+aerd a l+rd+a+++r++a ++rdn +++l+++++s++      +++ +gv+v++g+k++++lqq+
  Kalax.0446s0003.2.p   7 VLSQRNDAVRERNMAIAEVKQAMAERDRAILERDAAVTDRDHARMQRDNVIAQLQHKTDSMNtsivihNQSESGVSVSQGAKQMQMLQQQ 96 
                          6789******************************************************99999999877778899999999*99999996 PP

            GAGA_bind 115 se.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........... 186
                          ++       p+ ++ a++ re   ++++p ++aa+++++       +++k++ke k+ ++kk + k+ +k +k++++ +           
  Kalax.0446s0003.2.p  97 QQqqrrqhlPNYSEVAFNPREVPFSDVFPQSSAASKTTK------ARKGKRAKEAKTVSPKK-PLKPARKIAKKGTRASskqltatsqhs 179
                          663454444444444444455555555554444444444......44444444444444433.222333333332221123344556677 PP

            GAGA_bind 187 .........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
                                    k+   + +l+ln+  lD+ +lPvP CsCtG+++ CYkWG GGWqSaCCtt++S+yPLP+++++r++R++grKmS+gaf+k
  Kalax.0446s0003.2.p 180 sddgtsgnlDKQIVLKGGLSLNELGLDDVNLPVPFCSCTGKPQSCYKWGKGGWQSACCTTALSMYPLPQMPNKRHSRMGGRKMSGGAFTK 269
                          8899987776666777899*********************************************************************** PP

            GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          l+ +La+eGyd+  p+DLk+hWAkHGtn+++ ir
  Kalax.0446s0003.2.p 270 LITRLASEGYDITVPIDLKNHWAKHGTNRYIIIR 303
                          ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-921303IPR010409GAGA-binding transcriptional activator
PfamPF062178.4E-808303IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDPYFAVLSQ RNDAVRERNM AIAEVKQAMA ERDRAILERD AAVTDRDHAR MQRDNVIAQL  60
QHKTDSMNTS IVIHNQSESG VSVSQGAKQM QMLQQQQQQQ RRQHLPNYSE VAFNPREVPF  120
SDVFPQSSAA SKTTKARKGK RAKEAKTVSP KKPLKPARKI AKKGTRASSK QLTATSQHSS  180
DDGTSGNLDK QIVLKGGLSL NELGLDDVNL PVPFCSCTGK PQSCYKWGKG GWQSACCTTA  240
LSMYPLPQMP NKRHSRMGGR KMSGGAFTKL ITRLASEGYD ITVPIDLKNH WAKHGTNRYI  300
IIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465992.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012465997.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466004.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466013.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466019.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466025.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466035.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466042.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466050.16e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016702980.13e-99PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_016707528.16e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707529.16e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707530.16e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707531.16e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
TrEMBLA0A0D2Q5471e-97A0A0D2Q547_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KKL46e-98A0A1U8KKL4_GOSHI; protein BASIC PENTACYSTEINE6-like isoform X2
TrEMBLA0A1U8KYL51e-97A0A1U8KYL5_GOSHI; protein BASIC PENTACYSTEINE6-like
STRINGGorai.002G124900.12e-98(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.22e-73basic pentacysteine 6