PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0446s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 607aa    MW: 67389.8 Da    PI: 6.6187
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0446s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-093894261954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kalax.0446s0020.1.p 389 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 426
                          554459******************************88 PP
2BELL125.71.8e-40251322172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          er++ q+k +kLls+l+eVd+rYkqy++q+q+v+ssF++vag g++kpYt+lAl++iSrhFrcL+dai++qi
  Kalax.0446s0020.1.p 251 ERNDFQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDTVAGNGASKPYTALALQTISRHFRCLRDAITNQI 322
                          68999******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-56170320IPR006563POX domain
PfamPF075261.1E-50176319IPR006563POX domain
PROSITE profilePS5007112.195367430IPR001356Homeobox domain
SMARTSM003898.3E-10370434IPR001356Homeobox domain
CDDcd000863.27E-12370431No hitNo description
SuperFamilySSF466893.55E-17371437IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-29373436IPR009057Homeodomain-like
PfamPF059204.0E-18387426IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MASYYPTTGT QRDAATMLYL KENYPGSYPE AQGNMMMMNY PPSYVTAYSN TLGSNAQVQQ  60
DSEIPSLAGS EPNQQPQQEM MSSLGEWRDG RNEVMVMHPV GSNCHGQGLS LSLGTQIPLG  120
IQAHPIQFRN LNPGFTSFLG PNASGDSGSI RDDENSLDKT DNNQSTFGMS CISRPISNSR  180
YLKVAQELLD EVVNVKKALK QPDFEKNPNK HDLKRKGSKD GGGMSNEHSA GEPPDPQESA  240
GKSVNELSTA ERNDFQNKLT KLLSMLDEVD RRYKQYYHQM QIVVSSFDTV AGNGASKPYT  300
ALALQTISRH FRCLRDAITN QIQATRKSLG DQDARGSGKG IGISRLRFVD QQLRQQKALQ  360
ELGMMQQHTW RPQRGLPESS VSVLRAWLFE HFLHPYPKDS DKIMLARQTG LTRSQVSNWF  420
INARVRLWKP MVEEMYKEEA GEAEIDSNSS SDQTPRGGNK DDTRNSDNRP EEEMPQQTTT  480
CNLPAVDMAR SSHGGGAAFQ NGPQGETANN FRLIQSGNRF MDGSAAAYQH MSELGRFGNN  540
SGVSLTLGLQ NYEGGLLPMS SEPHRNFIAV RSRDMYNPAT NSIQQEPPDC EHHRFSSSQL  600
LHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16376434563Homeobox protein Meis2
3k2a_B8e-16376434563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920729.10.0BEL1-like homeodomain protein 6
RefseqXP_023920730.10.0BEL1-like homeodomain protein 6
TrEMBLA0A498J1C40.0A0A498J1C4_MALDO; Uncharacterized protein
STRINGXP_008382306.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-134BEL1-like homeodomain 6