PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0446s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 386aa    MW: 42826.1 Da    PI: 7.0452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0446s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08207254455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Kalax.0446s0038.1.p 207 SHSLAERVRREKIGQRMRILQDLVPGC----NKITGKAGMLDEIINYVQVLQ 254
                          8**************************....999**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-16201269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-9201258No hitNo description
Gene3DG3DSA:4.10.280.106.1E-15203265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.818203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6207254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-8209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMRSSLAEMT PDCFGSSGDL TRNGSEMTVI ERQQTQMKFL QQQHQSSAGE TQYNDQARII  60
QASQQTQSLT KGDLGLLNPC LGWPELVHLS MPKEMLHSSS DNVHDRYSLE MSTLTTSFST  120
GVPYRTATLE NEGDDIVVAP KSSLEIVKDS LKKRKADQWP NPKIIYSTIT LQSIHMKGGT  180
SINKQTSEVT KPEYIHVRAR RGQATDSHSL AERVRREKIG QRMRILQDLV PGCNKITGKA  240
GMLDEIINYV QVLQRQVEFL SMKLATVTIA HDFNNIINIP SAVHTGVAVT DAISHAHLFF  300
NQSHASNITE TGQNSFDTAW GSTMSTPTSV HKYFLDAAGF TPPLTWNPDF QAVPGQTFHQ  360
SRSGTFSSYP TEADTTSMSN QFTMF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-44cryptochrome-interacting basic-helix-loop-helix 1