PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0448s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 501aa    MW: 54340 Da    PI: 5.2221
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0448s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35281192102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ ++sws+ +nsfvv++  ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk
  Kalax.0448s0006.1.p  28 FLSKTYDMVDDASTDGVVSWSSGNNSFVVWNVAEFSKELLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKK 108
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                           ll++i+r+k 
  Kalax.0448s0006.1.p 109 YLLKTINRRKA 119
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.2E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3325117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3725117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3028117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEGAAAEGGV GGGGPGGGSG GGGLPPPFLS KTYDMVDDAS TDGVVSWSSG NNSFVVWNVA  60
EFSKELLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGKKYL LKTINRRKAP  120
HVNSPAPQIQ TAALGACIEV GKFGLEEEVE RLKRDKNLLM QELVRLKQQQ QSTDHQLQTV  180
GSRVQIMEQR QQQMMSFLAK AMQSPGFMSQ LVQQQNESSR RITNSSKKRR LPNQDEPVFR  240
TYGDRTPDGQ VTKFQPLLNE AAASMLRQIL NMNVSAQRET SLWKPDAFLI DDVSSSLNAF  300
DSGSSSSRLS GVTLAEVAPS STLSPLLEPS FPAKGVCGGV TEVQSPPHLL AAQLQPSKYP  360
ATELLNTGDT SVLPDLSDHL GFPKNIVGLP GASIADTGAK MGSVHPMMLA RDGSPTKSNT  420
ELSDDDGAKL PGIDDVFWEQ FLSTSPLTGE TDEMSSVLDD GIAQELDITS GQEALWNRGQ  480
HMDQLTEQMG LLTSNAAIRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2531171129Heat shock factor protein 1
5d5v_B5e-2531171129Heat shock factor protein 1
5d5v_D5e-2531171129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140031e-31KP014003.1 Populus simonii heat shock transcription factor A9 (HsfA9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273949.10.0PREDICTED: heat stress transcription factor A-1b
SwissprotQ84T611e-155HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLF6HEE61e-179F6HEE6_VITVI; Uncharacterized protein
STRINGVIT_16s0039g01840.t011e-180(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-127heat shock transcription factor A1E
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]