PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0451s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 671aa MW: 76685.9 Da PI: 6.6428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0451s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.4e-21	62	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++g+w++++ eleHnH ++ Kalax.0451s0018.1.p 62 FYNCYAKDQGFGVRVSNTWYR-KSREKYRGKLSCSSAGYKRRSEAN-----RPRPETRTGCPAMIKFRLMESGRWRIIEAELEHNHLIS 144 9*************99997.66669*********998888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-18	62	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-26	263	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.421	550	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MDEVSLNSEP VNEDEAVDGY EVEEDGDLGI NGGETSLLIQ GENPIAPAVG MEFETYEDVY 60 YFYNCYAKDQ GFGVRVSNTW YRKSREKYRG KLSCSSAGYK RRSEANRPRP ETRTGCPAMI 120 KFRLMESGRW RIIEAELEHN HLISPVSGKF YKSHKQVGSS RTVLEDGAGE APKARMFRTV 180 VVDAGGDGNP KLQDVDKRVW VHAFNRLSLK EGDAQAVHDF LRRSQLNDPQ FFYAMDHNEK 240 GTLRNVFWAD GRCRSAFKYF HDVVAIDTTC LTRKYAVPLV VFVGTNHHGQ LIIFGCGLLA 300 GETADSYTWL FRTWLTMMLG HPPQTIITNQ SKVLQAAISE VFPKASHLFS LVHMMESYPC 360 RFRGLFDSDA VRLDFNRAVY DSVKTEEFET AWERLTKRFG LLESDWFKTF YEDRKRCVPV 420 YVKDTFLAGL FPIQPTDSAP PMLLSHVHEK TSLTEFFAKY DEVAQTMNHL ETMADVESRN 480 GSCVLRSRCH FELQVSKLYT STVFKRFQDE VEAMYSCTST IQMNDDGPTE THIVREHVPH 540 DVNRSEAREF EVSYNPSEGD VKCICRLFNL KGYLCRHALC VLSQCGLVEI PAQYLLSRWR 600 KDIKRTYVVD HGHDSGTIDT RNPVNRHDHL CKVIVQIAEE GCKSRERYKL ALQLLGEMMS 660 RAKVVEDDGL *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MDEVSLNSEP VNEDEAVDGY EVEEDGDLGI NGGETSLLIQ GENPIAPAVG MEFETYEDVY  60
YFYNCYAKDQ GFGVRVSNTW YRKSREKYRG KLSCSSAGYK RRSEANRPRP ETRTGCPAMI  120
KFRLMESGRW RIIEAELEHN HLISPVSGKF YKSHKQVGSS RTVLEDGAGE APKARMFRTV  180
VVDAGGDGNP KLQDVDKRVW VHAFNRLSLK EGDAQAVHDF LRRSQLNDPQ FFYAMDHNEK  240
GTLRNVFWAD GRCRSAFKYF HDVVAIDTTC LTRKYAVPLV VFVGTNHHGQ LIIFGCGLLA  300
GETADSYTWL FRTWLTMMLG HPPQTIITNQ SKVLQAAISE VFPKASHLFS LVHMMESYPC  360
RFRGLFDSDA VRLDFNRAVY DSVKTEEFET AWERLTKRFG LLESDWFKTF YEDRKRCVPV  420
YVKDTFLAGL FPIQPTDSAP PMLLSHVHEK TSLTEFFAKY DEVAQTMNHL ETMADVESRN  480
GSCVLRSRCH FELQVSKLYT STVFKRFQDE VEAMYSCTST IQMNDDGPTE THIVREHVPH  540
DVNRSEAREF EVSYNPSEGD VKCICRLFNL KGYLCRHALC VLSQCGLVEI PAQYLLSRWR  600
KDIKRTYVVD HGHDSGTIDT RNPVNRHDHL CKVIVQIAEE GCKSRERYKL ALQLLGEMMS  660
RAKVVEDDGL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007215010.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2N9FVB8	0.0	A0A2N9FVB8_FAGSY; Uncharacterized protein
STRING	EMJ16209	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Kalax.0451s0018.1.p