PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0451s0018.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 621aa MW: 71515.4 Da PI: 7.9965

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0451s0018.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	4e-21	12	94	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++g+w++++ eleHnH ++ Kalax.0451s0018.2.p 12 FYNCYAKDQGFGVRVSNTWYR-KSREKYRGKLSCSSAGYKRRSEAN-----RPRPETRTGCPAMIKFRLMESGRWRIIEAELEHNHLIS 94 9*************99997.66669*********998888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-18	12	94	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-26	213	306	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.421	500	536	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	511	538	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MEFETYEDVY YFYNCYAKDQ GFGVRVSNTW YRKSREKYRG KLSCSSAGYK RRSEANRPRP 60 ETRTGCPAMI KFRLMESGRW RIIEAELEHN HLISPVSGKF YKSHKQVGSS RTVLEDGAGE 120 APKARMFRTV VVDAGGDGNP KLQDVDKRVW VHAFNRLSLK EGDAQAVHDF LRRSQLNDPQ 180 FFYAMDHNEK GTLRNVFWAD GRCRSAFKYF HDVVAIDTTC LTRKYAVPLV VFVGTNHHGQ 240 LIIFGCGLLA GETADSYTWL FRTWLTMMLG HPPQTIITNQ SKVLQAAISE VFPKASHLFS 300 LVHMMESYPC RFRGLFDSDA VRLDFNRAVY DSVKTEEFET AWERLTKRFG LLESDWFKTF 360 YEDRKRCVPV YVKDTFLAGL FPIQPTDSAP PMLLSHVHEK TSLTEFFAKY DEVAQTMNHL 420 ETMADVESRN GSCVLRSRCH FELQVSKLYT STVFKRFQDE VEAMYSCTST IQMNDDGPTE 480 THIVREHVPH DVNRSEAREF EVSYNPSEGD VKCICRLFNL KGYLCRHALC VLSQCGLVEI 540 PAQYLLSRWR KDIKRTYVVD HGHDSGTIDT RNPVNRHDHL CKVIVQIAEE GCKSRERYKL 600 ALQLLGEMMS RAKVVEDDGL *

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MEFETYEDVY YFYNCYAKDQ GFGVRVSNTW YRKSREKYRG KLSCSSAGYK RRSEANRPRP  60
ETRTGCPAMI KFRLMESGRW RIIEAELEHN HLISPVSGKF YKSHKQVGSS RTVLEDGAGE  120
APKARMFRTV VVDAGGDGNP KLQDVDKRVW VHAFNRLSLK EGDAQAVHDF LRRSQLNDPQ  180
FFYAMDHNEK GTLRNVFWAD GRCRSAFKYF HDVVAIDTTC LTRKYAVPLV VFVGTNHHGQ  240
LIIFGCGLLA GETADSYTWL FRTWLTMMLG HPPQTIITNQ SKVLQAAISE VFPKASHLFS  300
LVHMMESYPC RFRGLFDSDA VRLDFNRAVY DSVKTEEFET AWERLTKRFG LLESDWFKTF  360
YEDRKRCVPV YVKDTFLAGL FPIQPTDSAP PMLLSHVHEK TSLTEFFAKY DEVAQTMNHL  420
ETMADVESRN GSCVLRSRCH FELQVSKLYT STVFKRFQDE VEAMYSCTST IQMNDDGPTE  480
THIVREHVPH DVNRSEAREF EVSYNPSEGD VKCICRLFNL KGYLCRHALC VLSQCGLVEI  540
PAQYLLSRWR KDIKRTYVVD HGHDSGTIDT RNPVNRHDHL CKVIVQIAEE GCKSRERYKL  600
ALQLLGEMMS RAKVVEDDGL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007215010.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	M5WRA1	0.0	M5WRA1_PRUPE; Uncharacterized protein
STRING	EMJ16209	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Kalax.0451s0018.2.p