PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0453s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 247aa    MW: 26987.5 Da    PI: 6.2359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0453s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.7e-18950849
                         HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          r +tfskR++gi KKA EL+v+Cda+va i+fs++g+ + y
  Kalax.0453s0004.1.p  9 DRLITFSKRKAGINKKATELCVMCDAQVAFILFSPKGNAFSY 50
                         6889*********************************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-13153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.385154IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-20267IPR002100Transcription factor, MADS-box
PfamPF003194.9E-18650IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRLVQREEDR LITFSKRKAG INKKATELCV MCDAQVAFIL FSPKGNAFSY GHPDVKSVVN  60
KFLGREEYPI NGDPRVIELI DEHRRERNEE LVEFYNVLQH HVNEYTKHKE LVKQMAESRG  120
DDHMGWWDSK VEDMKTADEV KGLCRNIVGF QEALCHHMEM LQLIHQAAPP PPANPTFRTA  180
AFFQEPPFLP PPQAAATGAA PMALGGAGGD PSMLGGGSGP SVGFYDGGVG PSKLGNYGAS  240
SDGGGY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.18e-21AGAMOUS-like 57