PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0453s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 125aa MW: 14107.6 Da PI: 10.4537

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0453s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.3	3.1e-21	23	69	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k r +tfskR++gi+KKA+E+Sv+C+a+v+ i+fs+ gk y + Kalax.0453s0005.1.p 23 IEDKEDRVITFSKRKAGIFKKASEISVMCGAKVLFILFSPVGKAYSF 69 9******************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-27	13	72	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.39	13	73	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.76E-26	14	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-17	15	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-21	23	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-17	35	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-17	50	71	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MEMAAADTKK MTKGRQKIQM RLIEDKEDRV ITFSKRKAGI FKKASEISVM CGAKVLFILF 60 SPVGKAYSFG HPSVKSVADK FLGREESDGG KQIRQILENH LNKRLQKLVL HHFVAKSELE 120 AACEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q4PSU4	3e-22	AGL61_ARATH; Agamous-like MADS-box protein AGL61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	5e-26	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Kalax.0453s0005.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]