PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0457s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 440aa    MW: 50129.8 Da    PI: 5.6514
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0457s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.9e-35161062101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++++++++++sws+n +sf+v+++ ef +++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF +++F kg++
  Kalax.0457s0007.1.p  16 FLLKTYEMVDNPSTDSIVSWSANARSFIVWNPPEFCRDLLPQYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFGNDEFIKGQR 96 
                          9***************************************************************9998.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Kalax.0457s0007.1.p  97 HLLKNIHRRK 106
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-386100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5712105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3413105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDGSQQQQQG GAPAPFLLKT YEMVDNPSTD SIVSWSANAR SFIVWNPPEF CRDLLPQYFK  60
HNNFSSFIRQ LNTYGFRKID PEQWEFGNDE FIKGQRHLLK NIHRRKPIHS HSVQNQTHMN  120
PLAESERQEF ENEIQRLRRD NDLLLLKTQR HDQERCDFEI QIQSLMDRAQ IIEQRQVEMV  180
AFLARQFKKP EFASTFSRLS EKNNKKRRLS GSNDLFGDDN ITSDGLLTMK KKNVDPFSSS  240
LSNWGLIEKL DSSISYWENI LYLISQEMGE APCDDPSRAL CPPAAHLEMT RSSADSDTND  300
ESCSPVLCPS SPNSLGIHQS LEITGSVRNV DSPAISFNLG VDSQPKASDV DVNIKPASPR  360
GSKTNNPSQL NGKNDLFWEQ FLTETPIVGN TQEAESRRRD VHDTKIDDKP SAPVGFWWKT  420
NDVDNITERM GHLTPTERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211110519129Heat shock factor protein 1
5d5v_B1e-211110519129Heat shock factor protein 1
5d5v_D1e-211110519129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278037.11e-147PREDICTED: heat stress transcription factor A-4b
TrEMBLA0A2R6QBW41e-152A0A2R6QBW4_ACTCH; Heat stress transcription factor A-4b like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.19e-83heat shock transcription factor A4A