PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0457s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 671aa    MW: 76883.1 Da    PI: 6.5405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0457s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.4e-2162144290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++g+w++++ eleHnH ++
  Kalax.0457s0037.1.p  62 FYNCYAKDQGFGVRVSNTWYR-KSREKYRGKLSCSSAGYKRRSEAN-----RPRPETRTGCPAMIKFRLMESGRWRIIEAELEHNHLIS 144
                          9***************99997.66669*************998888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1862144IPR004330FAR1 DNA binding domain
PfamPF105514.5E-26263356IPR018289MULE transposase domain
PfamPF044348.1E-5550585IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.458550586IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-6561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MDEVSLNSEP VNEDEAADGY EVEEDGDLGI NVGETSLLIQ GENPIAPAVG MEFETYEDVY  60
YFYNCYAKDQ GFGVRVSNTW YRKSREKYRG KLSCSSAGYK RRSEANRPRP ETRTGCPAMI  120
KFRLMESGRW RIIEAELEHN HLISPVSGKF YKSHKQVGSS RTVLEDGAGE ALKARTFQTV  180
VVDAGGDGNP QLQHVDKRVW VHDFNRLNLK EGDARAVHDF FRRSQLNDPQ FFYAMDHNEK  240
GTLRNVFWAD GRCRNAFKYF HDVVAIDTTC LTRKYAVPLV VFVGTNHHGQ LIIFGCGLLV  300
GETADSYTWL FRTWLTMMLG HPPQTIITNQ SKVLQAAISE VFPKASHLFS LVHMMESYPC  360
RFRGLFDSDA VRLDFNRAVY DSVKTEEFET AWERLTKRFG LLESDWFKTF YEDRKLCVPV  420
YVKDTFLAGL FPIQPTDSAP PMLLSHVHEK TSLTEFFAKY DEVAQTMNHL ETMADVESRN  480
GSCVLRSRCH FELQVSKLYT STVFKRFQDE VEAMYSCTST IQMNGDGPTE THIVREHVPH  540
DVNRSEAREF EVSYNPSEGD VKCICRLFNL KGYLCRHALR VLSQCGLVEI PAQYLLSRWR  600
KDIKRTYVVD HDHDSGTIDT RNLVNMHDHL CKVIVQIAEE GCKSRERYKL ALQLLGEMMS  660
RAKVIEDDGL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215010.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLM5WRA10.0M5WRA1_PRUPE; Uncharacterized protein
STRINGEMJ162090.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6