PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0458s0002.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 302aa    MW: 34395.4 Da    PI: 7.7568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0458s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.7e-144691148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg++T  E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Kalax.0458s0002.2.p 46 RGNFTSHEEGMIIHLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 91
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.7971540IPR017877Myb-like domain
SuperFamilySSF466892.01E-2025100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-82651IPR009057Homeodomain-like
PROSITE profilePS5129422.1594195IPR017930Myb domain
SMARTSM007176.5E-134593IPR001005SANT/Myb domain
PfamPF002494.4E-124691IPR001005SANT/Myb domain
CDDcd001672.24E-84891No hitNo description
Gene3DG3DSA:1.10.10.602.3E-195295IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDTRGRHCLS LLHTGPRSWK LALRPYKYRK SCRLRWTNYL RPGIKRGNFT SHEEGMIIHL  60
QALLGNKWAA IASYLPERTD NDIKNYWNTH LKKKLDNRYQ QTMEQPHHHY LINSSQQLHH  120
PSNNMGAASS STSSSNNGVI TCVHNNYSPS PLLHATTNSS SLTSSSYYAS STENISRLLE  180
GWMRTSPKTN NKQLIIRSSR SEHESSCEDL IVDEAVVVPN KDDDTAGHEM TMWAKGRSEC  240
FDKEMMMMMK QQLDEEGGND SSHGHQHHNN PPFSIFEKWL FEESSNSGGG QVEEMQLSPI  300
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17159626109B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895424.11e-63myb-related protein 306
TrEMBLA0A1Q3BPR53e-59A0A1Q3BPR5_CEPFO; Myb_DNA-binding domain-containing protein
TrEMBLA0A2C9VAH63e-59A0A2C9VAH6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_73.135e-63(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-47myb domain protein 60