PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0458s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 213aa    MW: 23703.8 Da    PI: 10.7419
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0458s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-20665357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eq+ +Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  Kalax.0458s0011.1.p  6 SRWCPTPEQVMILEELYKSgIRTPNAAQIQQITSHLsyhgKIEGKNVFYWFQNHKARERQ 65
                         8*****************99**************************************97 PP
2Wus_type_Homeobox121.14.7e-39466264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         +++RW+PtpeQ++iLeelyksG+rtPn+++iq+it++L+ +Gkie+kNVfyWFQN+kaRerqk
  Kalax.0458s0011.1.p  4 SSSRWCPTPEQVMILEELYKSGIRTPNAAQIQQITSHLSYHGKIEGKNVFYWFQNHKARERQK 66
                         689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.365166IPR001356Homeobox domain
SMARTSM003891.3E-5370IPR001356Homeobox domain
SuperFamilySSF466891.03E-11469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-8665IPR009057Homeodomain-like
PfamPF000462.9E-18665IPR001356Homeobox domain
CDDcd000864.80E-4766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSSSSSRWCP TPEQVMILEE LYKSGIRTPN AAQIQQITSH LSYHGKIEGK NVFYWFQNHK  60
ARERQKLKRN KLGKQYCQAS TQMQLPSSSA SLQRSSATAS FGLHQAPFCT CTPSSSVGFL  120
KQEGEPARDN QMPKRRMNNH RRRSCGDGAG GKSVIRACDQ SWKQAKVNNA GSTHPTLCSS  180
NLQPLRTLQL FPVKATNLRQ ESGPFANNQF LT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.19e-38WOX family protein