PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0469s0024.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 354aa MW: 40238.5 Da PI: 6.8709

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0469s0024.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.8	2.1e-12	69	111	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 k +rr+++NReAAr+sR+RKka++++Le +L++ ++L k Kalax.0469s0024.3.p 69 KIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQELEK 111 789*************************988888877766654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-7	65	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	67	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-7	69	112	No hit	No description
Pfam	PF00170	3.1E-9	69	111	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-9	70	114	No hit	No description
PROSITE pattern	PS00036	0	72	87	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.0E-29	158	231	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGICDPLHQM NTWKDTFVRP QTNINTNDAV LVPVDPLSDS ISNMKGDYSP RESFENLRTN 60 YETRRPPEKI QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLSQLEQELE KARSQGVYLA 120 SALDSSHAGL FATVNPGIAA FEMDYAHWVE EQHDQTLELR NALQAQTISD VELKILVDTA 180 LIHYDNLFGM KGDAAKADVF YLISGMWRTP AERFFLWIGG FRPSELLNVL MPQLEPLSEQ 240 QHQSVSKLRQ SSQQAEDALS QGIDRLQQTL SQSIASQPVG EGRHLSQMVT EIEKLDALEN 300 FLNQADHLRQ QTLQHMSRIL TTRQAARGLL ALGEYFHRFR ALSSLWAARP PET*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGICDPLHQM NTWKDTFVRP QTNINTNDAV LVPVDPLSDS ISNMKGDYSP RESFENLRTN  60
YETRRPPEKI QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLSQLEQELE KARSQGVYLA  120
SALDSSHAGL FATVNPGIAA FEMDYAHWVE EQHDQTLELR NALQAQTISD VELKILVDTA  180
LIHYDNLFGM KGDAAKADVF YLISGMWRTP AERFFLWIGG FRPSELLNVL MPQLEPLSEQ  240
QHQSVSKLRQ SSQQAEDALS QGIDRLQQTL SQSIASQPVG EGRHLSQMVT EIEKLDALEN  300
FLNQADHLRQ QTLQHMSRIL TTRQAARGLL ALGEYFHRFR ALSSLWAARP PET*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306598.1	1e-164	transcription factor TGA7
Swissprot	Q93ZE2	1e-137	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A385ZA14	1e-164	A0A385ZA14_9ROSI; BZIP1 (Fragment)
STRING	POPTR_0005s16400.1	1e-164	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-125	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Kalax.0469s0024.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]