PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0470s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 776aa    MW: 84929.7 Da    PI: 7.0259
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0470s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.6e-16477515240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  Kalax.0470s0020.1.p 477 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCHNKP 515
                          689**********************************96 PP
2TCR49.11.1e-15562601140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+C+N+ 
  Kalax.0470s0020.1.p 562 RHKRGCNCKKSSCLKKYCECYQSGVGCSLNCRCESCQNTY 601
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-18476517IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.463477602IPR005172CRC domain
PfamPF036384.7E-12479514IPR005172CRC domain
SMARTSM011147.4E-16562603IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.9E-11564600IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MDTPQKNRTG TPGSKIEESP VFNYLSNLSP IKPVKSIHIS QSFTSLNLTS PSSVFTSPHI  60
ISSFKDSAFL KRHRFSDQSR ASDFDEGTKD SSKEEFVGSC QLPDNAVNKD FDLEHPVTEV  120
DTNHGQQSEV PKVLPRTLEY DHGTPACETK SPLFTDQRDE DSAEASGSIA SFAHGTVRES  180
SDKSDGVPGT FQNTPHRERL RLHWDNLATD SADSLFINSP NEAIAFRRLL DKSPDNEENP  240
GSLASLFPDS TNELRLAQPV DQVDFVGVGM AQQVNRVKDT QPQYLDWPPE IIPCRVEEGT  300
CNNSSDDQLG SNSHQGVRRR CLTFETVGGH RKSSTSVANR LPDVPLQPEE KGTSRFEQSI  360
PSKPVSACSS QLVKSGIGLH LNALATAKDK QILLPEHHPA GVEIGVSSSK TSFCPATSQE  420
SPRVALDTGS YMSSGPLRTD MQVSEDDSTA VAPSEDLNST SPRKKRPKLA HAGDDESCKR  480
CNCKKSKCLK LYCECFAAGV YCIEPCACQD CHNKPIHEDT VLATRKQIES RNPLAFAPRV  540
IRASQALPDV GDETANTPAS ARHKRGCNCK KSSCLKKYCE CYQSGVGCSL NCRCESCQNT  600
YGRKDGSEVD LEVEVEAAEE EPQPTEKSVV DRGLEKAVLH KHEERNLDPS FPATPSRLSR  660
LAVKLQFPSK GKPMRSSFLS IGSSFGSQND TRGVKLSSIP LPPKFEKSLP TTHAEEEMPE  720
LLQNQGSPRN IIKSGSPNGK RVSPPQCKSR PSPSRRSTRR LILQAIPSFP SINQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1648159914120Protein lin-54 homolog
5fd3_B3e-1648159914120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-103TESMIN/TSO1-like CXC 2