PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0472s0007.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 342aa MW: 38852.5 Da PI: 7.1778

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0472s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	3.8e-49	12	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP+deel+v+yL++kv++++++ +i+++d+y ++PwdLp+k+ +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+dk Kalax.0472s0007.1.p 12 LPPGFRFHPSDEELIVHYLQNKVNSRPVPG-CIIADIDLYMFNPWDLPSKALFGENEWFFFSPRDRKYPNGARPNRAAASGYWKATGTDK 100 79***********************999.78***********8777899******************************* PP NAM 91 evlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ + e++g+kk Lvfy gr p+g+ktdW+m+eyrl Kalax.0472s0007.1.p 101 PIMRNntasscgRVETIGVKKGLVFYVGRPPTGSKTDWIMNEYRL 145 866666555555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-59	10	174	IPR003441	NAC domain
PROSITE profile	PS51005	56.74	12	175	IPR003441	NAC domain
Pfam	PF02365	4.2E-26	13	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDEKSTHLPI QLPPGFRFHP SDEELIVHYL QNKVNSRPVP GCIIADIDLY MFNPWDLPSK 60 ALFGENEWFF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIMRNNTASS CGRVETIGVK 120 KGLVFYVGRP PTGSKTDWIM NEYRLIDSIS NWGSHKRKGS SMRLDDWVLC RVRQRGSHSR 180 NVWDDPNGLT ANDRSASSFN TRKSEMQDFL TDTNRNLVGW PLLNSISATS QDDICSMTSS 240 LTHEEINNAM FSPNLKRKFA EDHLHDDCSF MPWPLKKIYS ASRDQKNEKE EILSTSNSSY 300 NIAPAANWLT DANAPCQFYC LDDEWNIISE NCQALTGFSR S*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDEKSTHLPI QLPPGFRFHP SDEELIVHYL QNKVNSRPVP GCIIADIDLY MFNPWDLPSK  60
ALFGENEWFF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIMRNNTASS CGRVETIGVK  120
KGLVFYVGRP PTGSKTDWIM NEYRLIDSIS NWGSHKRKGS SMRLDDWVLC RVRQRGSHSR  180
NVWDDPNGLT ANDRSASSFN TRKSEMQDFL TDTNRNLVGW PLLNSISATS QDDICSMTSS  240
LTHEEINNAM FSPNLKRKFA EDHLHDDCSF MPWPLKKIYS ASRDQKNEKE EILSTSNSSY  300
NIAPAANWLT DANAPCQFYC LDDEWNIISE NCQALTGFSR S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-64	3	172	6	165	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028776005.1	7e-93	NAC domain-containing protein 2-like
Swissprot	A0SPJ6	7e-75	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	A0SPJ9	7e-75	NAM2_HORVV; NAC transcription factor NAM-2
Swissprot	Q84TD6	3e-75	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A438IPZ5	1e-87	A0A438IPZ5_VITVI; NAC transcription factor 25
TrEMBL	F6HR10	1e-87	F6HR10_VITVI; Uncharacterized protein
STRING	VIT_08s0040g02110.t01	2e-88	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-77	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Kalax.0472s0007.1.p

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]