PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0472s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 112aa    MW: 12604.1 Da    PI: 4.0146
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0472s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-0718501145
                         HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                          l+d+ +q + + W++Ia ++g g+++k++ ++++
  Kalax.0472s0019.1.p 18 ALLDVNEQVPDR-WEKIATMVG-GKSAKEVEEHYN 50
                         577777888878.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121153IPR017877Myb-like domain
CDDcd001671.84E-5653No hitNo description
SuperFamilySSF466891.94E-9658IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-51754IPR009057Homeodomain-like
PfamPF002496.2E-61751IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
TLKYEAWSWE KNKKFELALL DVNEQVPDRW EKIATMVGGK SAKEVEEHYN ALVQDVKIIE  60
FDAYIDDYDE SNALAEPQSI QQLATTLPLG LCLNVENEAS FQELLTPLNS G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.11e-14RAD-like 4