PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0476s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 384aa    MW: 43167.4 Da    PI: 6.9354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0476s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.71.9e-52141411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Kalax.0476s0044.1.p  14 MLPGFRFHPTDEELVAFYLKRKIQQRPLAI-ELIKQLDIYKHDPWDLPKLAATGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 102
                          579************************999.89***************8888899*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Kalax.0476s0044.1.p 103 PIYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
                          ****956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.86614173IPR003441NAC domain
SuperFamilySSF1019414.45E-5814173IPR003441NAC domain
PfamPF023651.1E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDEGNDDDKI DEIMLPGFRF HPTDEELVAF YLKRKIQQRP LAIELIKQLD IYKHDPWDLP  60
KLAATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLADYSVP QKRFTDKASP VNDAWAICRI FKKTNTTAQR  180
AVSHCWVSPT SPDNLKPTKC GGQSSQLTSA EPNIISMTPK PTSPNFPFSY DTLSHQQQHS  240
CATSFSHPDL SYYKSITPTS HIPNNLILPP HDNSSISSMA LFNVSPSPMT FQEFSKAAAS  300
DSSDLTEFPS TLLQALLHEE EHHLPELREN ASCGANSDDT WNLLNPGFGF SVSDPASEAW  360
RSNLVWDSSP CPSEMSTNYK CYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-531618019171NO APICAL MERISTEM PROTEIN
1ut4_B2e-531618019171NO APICAL MERISTEM PROTEIN
1ut7_A2e-531618019171NO APICAL MERISTEM PROTEIN
1ut7_B2e-531618019171NO APICAL MERISTEM PROTEIN
4dul_A2e-531618019171NAC domain-containing protein 19
4dul_B2e-531618019171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920077.11e-137protein FEZ-like
SwissprotQ9ZVH01e-107FEZ_ARATH; Protein FEZ
TrEMBLB9S8V81e-135B9S8V8_RICCO; NAC domain-containing protein, putative
STRINGXP_002522427.11e-136(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-107NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]