PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0478s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 832aa    MW: 91393.5 Da    PI: 5.9512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0478s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-181775357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.0478s0019.1.p 17 KYVRYTPEQVEALERVYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                         5679*****************************************************97 PP
2START168.93.4e-531623652200
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+++l+d++ W + ++ +++l+v s++  g
  Kalax.0478s0019.1.p 162 IAEETLTEFLSKATGTAVEWVQLPGMKPGPDSIGIIAISHSCVGVAARACGLVSLDPP-RVADILKDRPSWYRECRTVDVLNVMSTAngG 250
                          789*******************************************************.9999999999*****************999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l++ Rdf+ +R++  +++g++vi+++S++++q+ p+     ++vRae+lpSg+li+p+++g+s +++v+h+dl+++
  Kalax.0478s0019.1.p 251 TIELLYMQLYAPTTLAAaRDFWLLRFTSVMEDGSLVICERSLNHTQNGPSmppVNHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEAS 340
                          ************************************************99888899********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHT CS
                START 176 lphwllrslvksglaegaktwvatl 200
                          +++++lr+l++s++  ++kt++a+l
  Kalax.0478s0019.1.p 341 SVPEVLRPLYESSALLAQKTTMARL 365
                          ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6941276IPR001356Homeobox domain
SMARTSM003894.7E-161480IPR001356Homeobox domain
SuperFamilySSF466892.91E-171578IPR009057Homeodomain-like
CDDcd000863.88E-171777No hitNo description
PfamPF000464.2E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-181975IPR009057Homeodomain-like
CDDcd146862.34E-669108No hitNo description
PROSITE profilePS5084825.682152353IPR002913START domain
CDDcd088752.79E-71156363No hitNo description
Gene3DG3DSA:3.30.530.202.2E-21161366IPR023393START-like domain
SMARTSM002345.8E-38161372IPR002913START domain
SuperFamilySSF559611.14E-34161353No hitNo description
PfamPF018522.7E-50162365IPR002913START domain
PfamPF086702.0E-50688830IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MMSMNSGGSK MGMDNGKYVR YTPEQVEALE RVYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQQ  120
TQNTTVAATD TSCESVVTSG QQQLVPFQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQLPGMKPG PDSIGIIAIS HSCVGVAARA CGLVSLDPPR VADILKDRPS WYRECRTVDV  240
LNVMSTANGG TIELLYMQLY APTTLAAARD FWLLRFTSVM EDGSLVICER SLNHTQNGPS  300
MPPVNHFVRA EMLPSGYLIR PCEGGGSIIH VVDHMDLEAS SVPEVLRPLY ESSALLAQKT  360
TMARLMACTC LKKGSSTVGC DEGGSRWKGW WGFNQAVNGF TDEGWSVVET DGMDDVTILV  420
NSSPSKLVGT NLFYATGLPS SSNAVLCAKA SMLLQDVPPA LLIRFLREHR SEWADSSIDA  480
YSASAIRPGA CGLPETRVGN YGSQIILPLA HTIENEEFME VIKLENFGHY QDDMIMPGDI  540
FLLQLCNGID ETATGTSAEL IFAPMDASFS DDAPLLPSGF RIIPLGSGSD PSSPNRTLDL  600
ASALEAGSVG SRVAGDISSQ GGKTKSVMTI AFQFAFDLHM QDNVTAMARQ YVRSIISSVQ  660
RVALALSPSG FNTHPTIRRP PGTPEAHTLA RWICHSYRSF LGVDLLKPNT DGSEHILKSL  720
WHHSDAVLCC SLKALPVFTF ANQAGMDMLE TTFAALQDIT LEKIFDEKGR KTLCTEFPQI  780
MQLGFMSLQG GICLSSMGRP VSYERAVAWK VLDEDENAHC ICFMFISWSF V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918167.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A059CMJ70.0A0A059CMJ7_EUCGR; Uncharacterized protein
STRINGXP_010047286.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]