PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0480s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 248aa    MW: 27053.3 Da    PI: 9.0237
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0480s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.5e-40401411101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa++Cv+apyf ++q +++fa+vhk+FGasnv+kll+++p ++r+d++ +++yeA+ar++dPvyG+v++il+lqqq++ 
  Kalax.0480s0011.1.p  40 PCGACKFLRRKCAAGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLQHIPVNRRQDTVVTVTYEAQARLSDPVYGCVSTILALQQQVAA 129
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l++el++++++l
  Kalax.0480s0011.1.p 130 LQTELSMVQSQL 141
                          *******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.33939141IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3940138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MADPPGGRGR ETMSHRKGQS KRPDDEATGR IPAATPTTPP CGACKFLRRK CAAGCVFAPY  60
FGSDQGAARF AAVHKVFGAS NVSKLLQHIP VNRRQDTVVT VTYEAQARLS DPVYGCVSTI  120
LALQQQVAAL QTELSMVQSQ LINRKLAATN SLQTSQQQQL LGPQQQMSSM SSVMMQPAYS  180
NNSSSSNNNN DNNTLMNHLA SFNSNFGAAT SFQPLRLSRH QLQNEDDDEE KSPDAIIFTN  240
DIFHRRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-39341551125LOB family transfactor Ramosa2.1
5ly0_B4e-39341551125LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271115.16e-81PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV33e-69LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1Q3D8G08e-81A0A1Q3D8G0_CEPFO; DUF260 domain-containing protein (Fragment)
STRINGVIT_08s0056g01650.t012e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-53LOB domain-containing protein 20