PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0483s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 392aa    MW: 44195 Da    PI: 6.8608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0483s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.97.9e-53201471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++kv gk++++ ++i+e+diyk+ePwdLp  +++++++ ewyf+s  dkky +g r nrat++gyWkatg+
  Kalax.0483s0011.1.p  20 LAPGFRFHPTDEELVRYYLTRKVCGKNVRI-DAISEADIYKMEPWDLPglSNMRSRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGN 108
                          579***************************.99***************6447888888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v++ ++++vg+kktLvf+kgrap g++t+Wvmheyrl
  Kalax.0483s0011.1.p 109 DRSVKR-ESRTVGMKKTLVFHKGRAPGGKRTNWVMHEYRL 147
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6116170IPR003441NAC domain
PROSITE profilePS5100557.06420170IPR003441NAC domain
PfamPF023654.3E-2722147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAIICHENKA VTSPPPPPAL APGFRFHPTD EELVRYYLTR KVCGKNVRID AISEADIYKM  60
EPWDLPGLSN MRSRDLEWYF YSALDKKYGN GARMNRATSK GYWKATGNDR SVKRESRTVG  120
MKKTLVFHKG RAPGGKRTNW VMHEYRLVDE ELERLGIVKD GFVLCRVFQK SGLGPPNGDQ  180
YAPFDESEWD DNQLVLVPGS ETGDEGLVSD ETEPRDSSSL EGNNQDEKHQ ETQPEKTENH  240
LRDFLGTALV CKNEKLGSWS LPSIVRAKRP RHFGSDPSRT KSSSSSLPLD PSLSIKTAVT  300
MADAAALAAR TLLEFPKESP QPSRFDIASF DIPVHPSYLD LINNLQKEIH MVSADRDKFR  360
IEMMHAQAMI DVLQSRINFL LQENEELKKS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4861703165NO APICAL MERISTEM PROTEIN
1ut4_B5e-4861703165NO APICAL MERISTEM PROTEIN
1ut7_A5e-4861703165NO APICAL MERISTEM PROTEIN
1ut7_B5e-4861703165NO APICAL MERISTEM PROTEIN
4dul_A5e-4861703165NAC domain-containing protein 19
4dul_B5e-4861703165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432498.11e-135PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQY01e-107NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A1S3WXV31e-133A0A1S3WXV3_TOBAC; NAC domain-containing protein 78-like
STRINGXP_009619467.11e-134(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-89NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]