PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0483s0011.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 322aa MW: 36331.9 Da PI: 6.9672

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0483s0011.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.1	5.5e-30	3	77	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ewyf+s dkky +g r nrat++gyWkatg+d++v++ ++++vg+kktLvf+kgrap g++t+Wvmheyrl Kalax.0483s0011.2.p 3 SRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGNDRSVKR-ESRTVGMKKTLVFHKGRAPGGKRTNWVMHEYRL 77 45679**********************************9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.943	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-37	3	100	IPR003441	NAC domain
Pfam	PF02365	7.7E-14	8	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MRSRDLEWYF YSALDKKYGN GARMNRATSK GYWKATGNDR SVKRESRTVG MKKTLVFHKG 60 RAPGGKRTNW VMHEYRLVDE ELERLGIVKD GFVLCRVFQK SGLGPPNGDQ YAPFDESEWD 120 DNQLVLVPGS ETGDEGLVSD ETEPRDSSSL EGNNQDEKHQ ETQPEKTENH LRDFLGTALV 180 CKNEKLGSWS LPSIVRAKRP RHFGSDPSRT KSSSSSLPLD PSLSIKTAVT MADAAALAAR 240 TLLEFPKESP QPSRFDIASF DIPVHPSYLD LINNLQKEIH MVSADRDKFR IEMMHAQAMI 300 DVLQSRINFL LQENEELKKS V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	7	100	72	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	7	100	72	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	7	100	72	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	7	100	72	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-29	7	100	75	168	NAC domain-containing protein 19
3swm_B	3e-29	7	100	75	168	NAC domain-containing protein 19
3swm_C	3e-29	7	100	75	168	NAC domain-containing protein 19
3swm_D	3e-29	7	100	75	168	NAC domain-containing protein 19
3swp_A	3e-29	7	100	75	168	NAC domain-containing protein 19
3swp_B	3e-29	7	100	75	168	NAC domain-containing protein 19
3swp_C	3e-29	7	100	75	168	NAC domain-containing protein 19
3swp_D	3e-29	7	100	75	168	NAC domain-containing protein 19
4dul_A	2e-29	7	100	72	165	NAC domain-containing protein 19
4dul_B	2e-29	7	100	72	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016432498.1	1e-104	PREDICTED: NAC domain-containing protein 78-like
TrEMBL	A0A1S3WXV3	1e-103	A0A1S3WXV3_TOBAC; NAC domain-containing protein 78-like
STRING	XP_009619467.1	1e-103	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	1e-62	NAC domain containing protein 52

Link Out ? help Back to Top
Phytozome	Kalax.0483s0011.2.p