PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0483s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 350aa    MW: 37850.4 Da    PI: 6.1366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0483s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012102124123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C k+Fs++  L  H++ H
  Kalax.0483s0022.1.p 102 FTCTFCLKTFSTSQALGGHQNAH 124
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-499128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.14E-699129No hitNo description
PfamPF139124.9E-6101126IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.614102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEQPPPPPPP FFPPNPPPEI VNVDDQDDPL ELGLGLPNVS QGNNNNNHDN NAQNVPSNIV  60
QPAAVIVGHN NEEVLRLGGN RDSTAGIGGG RQIPSPRSDR VFTCTFCLKT FSTSQALGGH  120
QNAHKEERQA ARNLLADVQR DDAQAADMGR HQPLLESYGQ GLMSQHVAPN YNNPFQTPVY  180
GDVIQRPSNP SMTLPQTTPL LTGHGQHHPW QASGGSRGLG GFGSGSSMSS TPERPPPHCP  240
IYRGYDSSHF TMGFNTNIYN PFPRVPSWQS RATEQRLAYQ FRPSYSQHQQ VRPVGGHDNV  300
GLLGTGLSGR IRNHEAGQGS GNNQREEGGN EQPADDNAPD DELDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.15e-12C2H2 family protein