PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0490s0030.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 362aa MW: 40878.3 Da PI: 7.0763

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0490s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.1e-53	11	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeel+++yL+kkv+g++++l +vi+e+d++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg Kalax.0490s0030.1.p 11 VPPGFRFHPTDEELLNYYLRKKVSGEEIDL-DVIREIDVNKLEPWDLRdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 99 69**************************.9***********843444443456*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk+v+++ +++ gl+ktLvfy+grap+g+ktdW+mheyrl Kalax.0490s0030.1.p 100 RDKAVHHNgSSRRLGLRKTLVFYTGRAPHGQKTDWIMHEYRL 141 ***866778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-59	5	169	IPR003441	NAC domain
PROSITE profile	PS51005	58.973	11	169	IPR003441	NAC domain
Pfam	PF02365	3.3E-28	12	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MMSGSSGQLS VPPGFRFHPT DEELLNYYLR KKVSGEEIDL DVIREIDVNK LEPWDLRDKC 60 RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAVHHNGSS RRLGLRKTLV 120 FYTGRAPHGQ KTDWIMHEYR LDDHHNITHN TTLDHQEDDG WVVCRVFKKK NNPRSDYEQD 180 LKNPNTSKND EDESLTQRAW LPSSYNNTNN GSSTPMILMQ PPHMNYSSAI INTSMHLPQL 240 FSPEANVPTF MSPIITSNDN NNADVECSHS LLRLMSSSSS PAAASGLLSL NNNTGSSSSD 300 WSFLDKLLAT NNISQHIQLL DHHHHYNAPP SFQLVDYVGA SAHKTHLDCF GCESDSLKYS 360 K*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MMSGSSGQLS VPPGFRFHPT DEELLNYYLR KKVSGEEIDL DVIREIDVNK LEPWDLRDKC  60
RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAVHHNGSS RRLGLRKTLV  120
FYTGRAPHGQ KTDWIMHEYR LDDHHNITHN TTLDHQEDDG WVVCRVFKKK NNPRSDYEQD  180
LKNPNTSKND EDESLTQRAW LPSSYNNTNN GSSTPMILMQ PPHMNYSSAI INTSMHLPQL  240
FSPEANVPTF MSPIITSNDN NNADVECSHS LLRLMSSSSS PAAASGLLSL NNNTGSSSSD  300
WSFLDKLLAT NNISQHIQLL DHHHHYNAPP SFQLVDYVGA SAHKTHLDCF GCESDSLKYS  360
K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	8	172	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	8	172	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	8	172	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	8	172	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	9e-54	8	172	17	171	NAC domain-containing protein 19
3swm_B	9e-54	8	172	17	171	NAC domain-containing protein 19
3swm_C	9e-54	8	172	17	171	NAC domain-containing protein 19
3swm_D	9e-54	8	172	17	171	NAC domain-containing protein 19
3swp_A	9e-54	8	172	17	171	NAC domain-containing protein 19
3swp_B	9e-54	8	172	17	171	NAC domain-containing protein 19
3swp_C	9e-54	8	172	17	171	NAC domain-containing protein 19
3swp_D	9e-54	8	172	17	171	NAC domain-containing protein 19
4dul_A	1e-53	8	172	14	168	NAC domain-containing protein 19
4dul_B	1e-53	8	172	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316163.2	1e-129	protein SOMBRERO
Refseq	XP_011014561.1	1e-129	PREDICTED: protein SOMBRERO-like
Refseq	XP_011014569.1	1e-129	PREDICTED: protein SOMBRERO-like
Refseq	XP_024466050.1	1e-129	protein SOMBRERO
Swissprot	Q9MA17	1e-106	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A3N7HAQ9	1e-127	A0A3N7HAQ9_POPTR; Uncharacterized protein
STRING	POPTR_0010s18420.1	1e-128	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	3e-88	NAC family protein

Link Out ? help Back to Top
Phytozome	Kalax.0490s0030.1.p

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]