PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0491s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25891.3 Da    PI: 8.4672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0491s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1965117456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++++t+eq+  Le+ Fe++r++ ++++++LA++lgL+ rqV vWFqNrRa+ k
  Kalax.0491s0018.1.p  65 KRKLTEEQTALLESSFENDRKLETDRKKRLAAELGLEPRQVVVWFQNRRARLK 117
                          4589***********************************************87 PP
2HD-ZIP_I/II100.71.3e-3264155293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eq +lLE+sFe+++kLe++rK++la eLgl+prqv vWFqnrRAR k ++lE ++++L+++++ + +++++Le++   L ++l
  Kalax.0491s0018.1.p  64 RKRKLTEEQTALLESSFENDRKLETDRKKRLAAELGLEPRQVVVWFQNRRARLKCQKLEDEFAKLRSSHNDVLAQKSQLETQIFVLDQKL 153
                          8**********************************************************************************9999999 PP

          HD-ZIP_I/II  92 ke 93 
                          k+
  Kalax.0491s0018.1.p 154 KN 155
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.48759119IPR001356Homeobox domain
SMARTSM003891.1E-1562123IPR001356Homeobox domain
SuperFamilySSF466891.71E-1764125IPR009057Homeodomain-like
CDDcd000861.62E-1564117No hitNo description
PfamPF000466.8E-1765117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1866124IPR009057Homeodomain-like
PRINTSPR000311.1E-59099IPR000047Helix-turn-helix motif
PRINTSPR000311.1E-599115IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAYCQRSRYG LEKYDEGDYS MLLTSQQLPC HTAKVEFTIP SGEKKQIRRR RKKNKGDENG  60
SVLRKRKLTE EQTALLESSF ENDRKLETDR KKRLAAELGL EPRQVVVWFQ NRRARLKCQK  120
LEDEFAKLRS SHNDVLAQKS QLETQIFVLD QKLKNVEKEL ERLSIWEEVL PAVHSTPTTS  180
SLSANNQPID GSMFSQESSM QQYLENGFCF QLEDSSNMLT CFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14866RRRKKNKGDENGSVLRKRK
25066RKKNKGDENGSVLRKRK
36267LRKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548355.11e-40PREDICTED: homeobox-leucine zipper protein ATHB-40-like
TrEMBLA0A178UXW21e-38A0A178UXW2_ARATH; HB40
TrEMBLA0A1P8B6F41e-38A0A1P8B6F4_ARATH; Homeobox protein 40
STRINGXP_010548355.16e-40(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.14e-38homeobox 53