PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0491s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 489aa MW: 51393.8 Da PI: 8.7136

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0491s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kalax.0491s0023.1.p 61 FVCEICSKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	13.1	0.00028	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Kalax.0491s0023.1.p 137 WKCEKCSKKYAVQSDWKAHAKIC 159 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.8E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.02E-6	60	83	No hit	No description
SMART	SM00355	0.036	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	61	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.2E-4	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.02E-6	132	157	No hit	No description
SMART	SM00355	140	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MAASSASGGD ASVSSSGDQP VAAAPPLKAA VKKKRNLPGM PDPDAEVIAL SPKTLMATNR 60 FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKDVKKR VYVCPESTCV HHDPSRALGD 120 LTGIKKHFCR KHGEKTWKCE KCSKKYAVQS DWKAHAKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARATETQA PKLNGKGSHP RDDPKDKNAA AAPGSPQPAP TADDVLSEAP 240 DSVVKITEEV RQQEVAAGLT GSCNVSGSPS SNSSPGSSMF ASLFASPSAS ASMQTRTPAF 300 TDLMRSVALQ GTPEFARQSS VEPVSLCLSA NQGSSSFFGT AGQERRQYAP PPQAAMSATA 360 LLQKAAQMGS SASNASFLRG LGVMSSSPAS TGQQESFPWS GMQMEQDRPA IQPGLPSIGN 420 PGYNDVMLSH SSMFSPKQAT LDLLGLGMAA SGNSNVGLSA ALLTSIGGNL DVAAAASLNG 480 DITREDIG*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MAASSASGGD ASVSSSGDQP VAAAPPLKAA VKKKRNLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKDVKKR VYVCPESTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKTWKCE KCSKKYAVQS DWKAHAKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARATETQA PKLNGKGSHP RDDPKDKNAA AAPGSPQPAP TADDVLSEAP  240
DSVVKITEEV RQQEVAAGLT GSCNVSGSPS SNSSPGSSMF ASLFASPSAS ASMQTRTPAF  300
TDLMRSVALQ GTPEFARQSS VEPVSLCLSA NQGSSSFFGT AGQERRQYAP PPQAAMSATA  360
LLQKAAQMGS SASNASFLRG LGVMSSSPAS TGQQESFPWS GMQMEQDRPA IQPGLPSIGN  420
PGYNDVMLSH SSMFSPKQAT LDLLGLGMAA SGNSNVGLSA ALLTSIGGNL DVAAAASLNG  480
DITREDIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-36	133	194	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-36	133	194	3	64	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024457504.1	0.0	protein indeterminate-domain 2 isoform X2
Swissprot	Q9LVQ7	1e-154	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2K2AFV5	0.0	A0A2K2AFV5_POPTR; Uncharacterized protein
STRING	POPTR_0005s12710.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-115	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Kalax.0491s0023.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]