PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0493s0050.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 666aa    MW: 72590.2 Da    PI: 6.5054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0493s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07252272526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ GtC+ Gd C +aHg
  Kalax.0493s0050.1.p 252 PCPEFRK-GTCRQGDACEYAHG 272
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.29E-1013125IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-913123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.87755125IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00145585IPR002110Ankyrin repeat
PfamPF136371.2E-556103No hitNo description
SMARTSM002489790122IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.105.7E-4244274IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5247273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784252274IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4252272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4280310IPR000571Zinc finger, CCCH-type
SMARTSM0035621282305IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.972282306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEEEGLCNMS SKLLEFAACD DLVGFRKAVE EEGCDIDDAG LWYGKRMGMK KMGLEERTPF  60
MIAAMFGSVD VFRYILEKGC VDVNRMCGSD GATALGCAIA GGAASASQVI GLLIDASADV  120
NLVGAYARNL GALVSRVAPV VNVSKDFNGA ELVSDPFDQE LIGGELEGEK LIGISVIEPF  180
KDVLEKRDYP IDLSLPDIKN GIYGTDEFRM YTFKIKPCSR AYSHDWTECP FVHPGENARR  240
RDPRKHHYSC VPCPEFRKGT CRQGDACEYA HGIFECWLHP AQYRTRLCKD ETGCNRRVCF  300
FAHKPEELRP LYASTGSAIP SPRSYSASGQ LDMSSLSPLA LGSPSVLIPS SSTPPMTPTG  360
LGSPRSGSMW QNQSVAFATN SRLKSTLSGR NLEFDSADQL GAESQHRRQQ QQQQQLMDEM  420
YGLSSPSFWS QAYESNSSYA AGSPAARVGE FNRLMARKSS NLEDIFASAD HSVMSQLQRL  480
SLDVNQSPSG IQMHQSVNHQ QLRASYPSNL SSSPARSPSF GNSSSSAAAF LSSRSNAFAK  540
RSQSFIDRSP TNQNSGYPSP VSSPSPLHGW GSPTGKLDWG VQGEELHKLR KSSSFGIRTN  600
GRSPAPGDPE IPWPSQSPSP SPHMKGSGPM DRLDEESHAQ YHLSSGKIPT WAEQMCLDHE  660
QTVAH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021682553.10.0zinc finger CCCH domain-containing protein 66
TrEMBLA0A1R3J6F00.0A0A1R3J6F0_9ROSI; Zinc finger, CCCH-type
STRINGEOY337030.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-143C3H family protein