PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0495s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 498aa    MW: 54479.9 Da    PI: 4.9772
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0495s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.91.6e-13170193326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           e C+f++rtG CkyG +CkF+H+
  Kalax.0495s0013.1.p 170 AEDCNFYMRTGSCKYGLSCKFNHP 193
                          689********************9 PP
2zf-CCCH22.32.3e-07217240427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           +C++++  G CkyG  C+F H++
  Kalax.0495s0013.1.p 217 TECKYYLSAGGCKYGKACRFEHSR 240
                          58******************9985 PP
3zf-CCCH34.24.3e-11261285226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++r+G Cky ++C+F+H+
  Kalax.0495s0013.1.p 261 GEKECPYYMRNGSCKYAASCRFNHP 285
                          7899********************9 PP
4zf-CCCH33.38.1e-11384410127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C ff+rtG Cky ++CkF+H++
  Kalax.0495s0013.1.p 384 PGQPECTFFLRTGDCKYRSTCKFHHPK 410
                          5789*********************96 PP
5zf-CCCH24.83.8e-08430455227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C +++ +G+Ck+G++C++ H+p
  Kalax.0495s0013.1.p 430 GQSICTHYRHYGICKFGPKCRYDHPP 455
                          7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-7167194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596167195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6168196IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11170193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5173192IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012213240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892213241IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5217239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5217242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5219241IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5259286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896259287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5261286IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-8261285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4265284IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4383410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051383411IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6385410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5387411IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4428455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112428456IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5430455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5431455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
METPEPIPSP DSDQHQPPIH DSQPPLPDPS DDDPKSPPPA PPTEELQAMI LKEDEAPGDG  60
DGDGGRVNGV SERKDEADGG FGGVGGGGSE NEGVAESETE RHGEKEKVEE VVKDGWSDDQ  120
QGRVDGGVEE TGDGYPVDGW SIGNGEGEPD WKEEAQGRDM QVQYPLRPGA EDCNFYMRTG  180
SCKYGLSCKF NHPLRRTNQT VKPRVKERED SSERPMTECK YYLSAGGCKY GKACRFEHSR  240
ETPSVVPVLE YNFLGLPIRP GEKECPYYMR NGSCKYAASC RFNHPDPTAG SDTPSGYAND  300
EHASSWSPSR PSNKVASFVP GSYTSAQGIH PQISEWNGYQ GPVFTAEKSF RPPPAFGLNI  360
PPMAGSAYSH FPSQLASEEF PERPGQPECT FFLRTGDCKY RSTCKFHHPK DRNVLPLCAM  420
TDKGLPLRPG QSICTHYRHY GICKFGPKCR YDHPPNIQQS EPSAMTGLGQ PHHPFSNFAS  480
PEDASRLSSM GEGTITL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028781830.11e-134zinc finger CCCH domain-containing protein 67-like isoform X3
SwissprotQ5RJC51e-111C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
STRINGEOY223601e-130(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-113C3H family protein