PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0495s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 214aa    MW: 24094.3 Da    PI: 7.4636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0495s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.62.9e-24101441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                          lppG+rF Pt+ +l+ +yL  k +  +  l++ +vi e+d++ ++P +L +       v +++++wy +++++++++ g   +r t+ gy
  Kalax.0495s0022.1.p  10 LPPGCRFFPTEPQLLRHYLSGKNSVFDhhLNV-NVIGEFDVLGHDPAELIEigcfeyGVGGRRRHWYCYAPSAERKRIG--GRRRTRGGY 96 
                          79*****************9986665511555.77**************745677655555777999999998887765..4566899** PP

                  NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          Wk +g+ ++v+ ++g ++g ++  vf   + +a+ g  tdWv+ ey+l
  Kalax.0495s0022.1.p  97 WKRKGRVRDVVGEGGVVIGRRTDYVFClrRFEAKCGALTDWVVYEYAL 144
                          **************************97566999************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-297159IPR003441NAC domain
PROSITE profilePS5100531.71410159IPR003441NAC domain
PfamPF023654.2E-1311144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MADPQAPLPL PPGCRFFPTE PQLLRHYLSG KNSVFDHHLN VNVIGEFDVL GHDPAELIEI  60
GCFEYGVGGR RRHWYCYAPS AERKRIGGRR RTRGGYWKRK GRVRDVVGEG GVVIGRRTDY  120
VFCLRRFEAK CGALTDWVVY EYALIEEDKD FVLCRAFQKS SQRKDVSQVA NFGVSDNSYL  180
HDSLDMASIL EQGDFIELDD LSKPLSSMGN AAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-19216112170NAC domain-containing protein 19
3swm_B4e-19216112170NAC domain-containing protein 19
3swm_C4e-19216112170NAC domain-containing protein 19
3swm_D4e-19216112170NAC domain-containing protein 19
3swp_A4e-19216112170NAC domain-containing protein 19
3swp_B4e-19216112170NAC domain-containing protein 19
3swp_C4e-19216112170NAC domain-containing protein 19
3swp_D4e-19216112170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282899.11e-46PREDICTED: NAC domain-containing protein 72 isoform X1
TrEMBLF6H1B73e-45F6H1B7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10250.t015e-46(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-14NAC family protein