PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0496s0036.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 211aa MW: 23251.9 Da PI: 9.2738

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0496s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.9	3.5e-11	113	159	2	47
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 ++W++eE++ ++++ k+l g+ +W+ I++++ Rt+ q+ s+ qk+ Kalax.0496s0036.1.p 113 LPWSEEEHKSFLRGLKELLGRgNWRGISKEFVRSRTPAQVASHAQKH 159 69***********9987777*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.77	106	164	IPR017930	Myb domain
SuperFamily	SSF46689	1.33E-13	108	164	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-12	110	163	IPR006447	Myb domain, plants
SMART	SM00717	2.0E-6	111	162	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-8	113	159	IPR009057	Homeodomain-like
Pfam	PF00249	9.6E-9	114	159	IPR001005	SANT/Myb domain
CDD	cd00167	2.59E-8	114	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAMETNDGYG SCEAADRLKP FDVGDRLALT DRSVNLASFS SGTNNECKES DQFTDGSIDV 60 FAEGLAGKSR SCGTADFSGG AAPGDRDGYF SDGSRHDKNV RSSANHSRRN KGLPWSEEEH 120 KSFLRGLKEL LGRGNWRGIS KEFVRSRTPA QVASHAQKHF IRQSAPPFKK RRNSLFDIPL 180 KESNVNIFSI FLPPRPHLLV PFSLTLLFDN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024948123.1	1e-30	probable transcription factor At5g61620
Refseq	XP_027101131.1	1e-30	probable transcription factor At5g61620
Refseq	XP_027103100.1	2e-30	probable transcription factor At5g61620
Refseq	XP_027173848.1	2e-30	probable transcription factor At5g61620
Swissprot	Q7XC57	3e-29	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A068UA75	6e-30	A0A068UA75_COFCA; Uncharacterized protein
STRING	XP_006490065.1	1e-29	(Citrus sinensis)
STRING	Gorai.006G274300.1	4e-30	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	1e-28	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0496s0036.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]