PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0499s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26185.7 Da    PI: 8.5876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0499s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.84.9e-2073127256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq + Lee F++n++++ +++eeLA++l+L  rqV vWFqNrRa+ k
  Kalax.0499s0009.1.p  73 RKKLRLSKEQSQLLEESFRQNHTLNPKQKEELADRLNLRPRQVEVWFQNRRARSK 127
                          788899***********************************************98 PP
2HD-ZIP_I/II117.47.8e-3873161189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          +kk+rlskeq++lLEesF+++++L+p++K+ela +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n++L+keveeLr+
  Kalax.0499s0009.1.p  73 RKKLRLSKEQSQLLEESFRQNHTLNPKQKEELADRLNLRPRQVEVWFQNRRARSKLKQTEIECEYLKRWFGSLTEQNRKLQKEVEELRA 161
                          69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2051130IPR009057Homeodomain-like
SuperFamilySSF466892.17E-2058130IPR009057Homeodomain-like
PROSITE profilePS5007118.12369129IPR001356Homeobox domain
SMARTSM003891.2E-1871133IPR001356Homeobox domain
CDDcd000862.06E-1872130No hitNo description
PfamPF000462.3E-1773127IPR001356Homeobox domain
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
SMARTSM003401.6E-21129172IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-9129163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGGVSPTTLT CLDLTISVPG SSSVGDVNMK PLRLVSKRPE PDDNWINIGC PNSSEEAEDN  60
DTDSPKGDHN PPRKKLRLSK EQSQLLEESF RQNHTLNPKQ KEELADRLNL RPRQVEVWFQ  120
NRRARSKLKQ TEIECEYLKR WFGSLTEQNR KLQKEVEELR AMKVGPPTVL SARNCEPTPT  180
SSLTMCPRCE RVSSTTAHVD TKPTSGSLPP PPCRIKSRLC SIADSPPPLF SNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594183.11e-80homeobox-leucine zipper protein HOX3
SwissprotQ0JKX18e-68HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH388e-68HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2C9UFF92e-79A0A2C9UFF9_MANES; Uncharacterized protein
STRINGcassava4.1_022041m4e-80(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-69homeobox-leucine zipper protein 17