PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0502s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 481aa    MW: 53238.6 Da    PI: 6.9119
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0502s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.5e-11210258155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++ r++A+++d      + + + g ++ +++Aa+a++ a++k++g
  Kalax.0502s0006.1.p 210 SIYRGVTRHRWTMRYEAHLWD------NSSRREGGYDKEDKAARAYDLAALKYWG 258
                          57*******************......78888999***99*************98 PP
2AP250.45.6e-16301352155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Kalax.0502s0006.1.p 301 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFPTEEEAAEAYDIAAIKFRG 352
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-14210268IPR016177DNA-binding domain
PfamPF008471.5E-7210258IPR001471AP2/ERF domain
CDDcd000184.12E-18210268No hitNo description
SMARTSM003801.9E-21211272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-11211267IPR001471AP2/ERF domain
PROSITE profilePS5103215.316211266IPR001471AP2/ERF domain
PRINTSPR003679.3E-7212223IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-18301362IPR016177DNA-binding domain
CDDcd000184.79E-25301362No hitNo description
PfamPF008472.6E-10301352IPR001471AP2/ERF domain
SMARTSM003801.2E-32302366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-19302361IPR001471AP2/ERF domain
PROSITE profilePS5103219.638302360IPR001471AP2/ERF domain
PRINTSPR003679.3E-7342362IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVTSADEPSR NRHSRQLHQT QQPEQHQNNH FISYAAASSD ASCPQYFFDN LYANGYSYSK  60
PQMSFQPTGA PDPLPWLSTS VSEPKLENLL DTSSMARYAE SQTETQNDSG LTVYEQGSGS  120
AGYFSQAAAQ LVQTNSGSEV VDSGSLNQVV TVASHHHHHQ LAELAVSNSH AQNNQNLSNR  180
ELMQVEERSV VAPQVDTSRK VSDTFGQRTS IYRGVTRHRW TMRYEAHLWD NSSRREGGYD  240
KEDKAARAYD LAALKYWGPT AVTNFPVSNY AKELEEMTSM TKQEFIASLR RKSSGFSRGA  300
SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFPTEEEAA EAYDIAAIKF RGTNAVTNFE  360
MSRYDVAAIT KATLPIGGAA RRLKSPPESE VSLALDEPRL QNPTNNISFS LTQPLSAIPC  420
GVPFDTVSSL YQHNLYHQLQ SSHAAAMAVP EPRTSIGAPT GPINFLPNSG DFYAWPHQSY  480
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969779.11e-159PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N81e-114AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A1R3GDZ81e-158A0A1R3GDZ8_COCAP; Uncharacterized protein
STRINGEOX919251e-158(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-116AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]