PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0502s0034.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 252aa MW: 28018.9 Da PI: 9.4471

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0502s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	113	167	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q ++Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Kalax.0502s0034.1.p 113 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTK 167 6778899**********************************************98 PP
2	HD-ZIP_I/II	116.5	1.6e-37	113	203	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q+++LEe F+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E dye+Lk+++++l+een+rL ke +eL+ + Kalax.0502s0034.1.p 113 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTKLKQTELDYEYLKKCCETLTEENRRLIKELKELK-A 201 69*************************************************************************************9.6 PP HD-ZIP_I/II 91 lk 92 lk Kalax.0502s0034.1.p 202 LK 203 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.13E-18	98	170	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-18	99	170	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	109	169	IPR001356	Homeobox domain
SMART	SM00389	3.3E-15	111	173	IPR001356	Homeobox domain
Pfam	PF00046	8.9E-17	113	167	IPR001356	Homeobox domain
CDD	cd00086	3.12E-16	113	170	No hit	No description
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
SMART	SM00340	7.2E-19	169	212	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.1E-8	169	204	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDHHGRGDLG LNLKLGSELV DHRPRSITHV KRNYQTAMRP CFELPLLSLG LGLDGGGGQV 60 DQGAVVKPGV KGLDGETSGQ STVSSFSNSG LSVMRERSYE DEDYNCFSND GVRKKLRLKK 120 DQAQVLEERF KQQSTLNPKQ KQALARQLNL SPRQVEVWFQ NRRARTKLKQ TELDYEYLKK 180 CCETLTEENR RLIKELKELK ALKQAQPNCV KLPAATLSIC PSCECVTTTP ARGGDCPSKS 240 KFFNSAPSAA Y*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	169	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002271511.2	2e-62	PREDICTED: homeobox-leucine zipper protein HAT22 isoform X2
Refseq	XP_018860369.1	1e-62	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46665	3e-54	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A1R3GED2	2e-61	A0A1R3GED2_COCAP; Uncharacterized protein
STRING	VIT_00s0732g00010.t01	6e-62	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-44	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Kalax.0502s0034.1.p