PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0504s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 302aa    MW: 34149.3 Da    PI: 10.528
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0504s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.52.3e-2048133186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +Wt +e+  Li+a+++++ +l+rg+lk+++Weev+  + ++ g+   +++++qC++k+e+l+kr++++k+  ++r    ss +p+f  ++
  Kalax.0504s0002.1.p  48 QWTPEETTSLIQAYQDKWYSLKRGQLKAHQWEEVAVTVaARCGYdeaTKTSTQCRHKMEKLRKRFRAEKRKGGGR----SSAWPFFGFMD 133
                          7*********************************998864445543389********************999986....789****8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.34241109IPR017877Myb-like domain
PfamPF138378.5E-2247135No hitNo description
SMARTSM005952.3E-456137IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSQMAATPSP SSSPPTQPSE SQSLLVKAAK PILLAIPVQT QKKAQAVQWT PEETTSLIQA  60
YQDKWYSLKR GQLKAHQWEE VAVTVAARCG YDEATKTSTQ CRHKMEKLRK RFRAEKRKGG  120
GRSSAWPFFG FMDRMERGPR PISARPVNMV RFQNPGESGE EEDCGDNHRR VSSSSRSINS  180
LIMKPHTIVN IYPGSTPPPS RARKGAELAV YKDGEFELEE NGFGKKRLLL SGLAAEMRAF  240
EQRIAWVENK KMEMMRDTQK MRMEMESKRL KMIHDSQAKI VETIYNGGPL KKIKIRTTSE  300
M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126128.19e-67probable serine/threonine-protein kinase samkC
TrEMBLA0A498IXM85e-63A0A498IXM8_MALDO; Uncharacterized protein
STRINGXP_008382615.19e-64(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.19e-40Trihelix family protein