PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0504s0004.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 813aa    MW: 88249.9 Da    PI: 6.6573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0504s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06388409426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C++f++ G C  Gd+C+F+H+
  Kalax.0504s0004.2.p 388 KVCQHFLK-GRCLKGDKCTFSHD 409
                          68******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161318.0E-7334409IPR032297Torus domain
PROSITE profilePS5010316.042384411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7384409IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4386410IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5388410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.756413437IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012413439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99438466IPR000571Zinc finger, CCCH-type
SMARTSM003560.95441465IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001443464IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MAEEHGEALL NLTCLRDESR LKSETLRGVI HILSRCYELP KETCRGDDSG PGGDHKNTLH  60
LNEPDPATAI NLDAAEDIIS THDSQHGDDQ QMHFSMDDIE NFLMDIDGIQ EPVPVNVSIN  120
QKALQLVPGA LLEKEAVEQH LPESSQHENG FFNIVEFDEA AQRADGSDKC VPSQKEQINQ  180
NQQLDEPNIQ SGSMNSQTNV HMTNGCDDIE EGEIDDIHAQ EKSSVSRENN VDSLQHSEAG  240
ADYQHSVEHK LCVSDFSRST SVRIVDNCPI QNDSKIERDF QAISDACANF DTVKTVDIPI  300
VNSAETHASL CANDSRKPVF YGDISEEASQ NAQGTLQMGV NIFKEKKRGG GSKEKRKLQK  360
RKKRKEIDKK LGVKRMKLPP ALMPKAVKVC QHFLKGRCLK GDKCTFSHDA TPLTKSEACV  420
HFARNNCLKG DACPYDHQLG KYPCNNYASQ GFCNRGNGCL FSHEIPAEEG SQGASTAEKL  480
DLKSPSVPET SSKNHANSAA SISIKPPVQV PKGLSFLSLG KSGTAKILKG TSKPIIVPVT  540
SNNDSFLDTQ LDHSVGNKNS VFKACSKSLI DSTSSLDRGL LGLHSLVSSK VPLNCVNNEL  600
LETSAKEHTP PVSHFSRLGM HSGSSMGNEM SVLKVDIHKE QASISKSQIT DNMHVEAIQA  660
EAPTRVHCFS SDKSLEIKPN QTLAASISKD HESGKKVSIQ NQRTHGIPRH SCAEELNTIV  720
STIPSSCSQG LAENKSMLCS VPKALIPALS FASKIECETK VPSLGSVGNS QFKKEPESRI  780
SSSRGRGSFN SGPVKASAVL DFIFGTGGKT QK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345364KKRGGGSKEKRKLQKRKKRK
2355370RKLQKRKKRKEIDKKL
3360365RKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-06C3H family protein