PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0505s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 271aa    MW: 28849.9 Da    PI: 8.8787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0505s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69.1e-08140164226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          k +lC+ f     Ck+Gd+C+FaHg
  Kalax.0505s0020.1.p 140 KSRLCNKFNSAEGCKFGDKCHFAHG 164
                          6799******99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.374101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.05174102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-675100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-67699IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7137169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056138166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-12139169IPR000571Zinc finger, CCCH-type
SMARTSM003560.02140165IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.42E-12205270IPR004088K Homology domain, type 1
SMARTSM003222.0E-4207271IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.6E-13208270IPR004088K Homology domain, type 1
PROSITE profilePS5008413.229208271IPR004088K Homology domain, type 1
PfamPF000132.1E-10210271IPR004088K Homology domain, type 1
CDDcd001052.69E-13212271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGADFSSRNK LVWNLNWNPV DLHCTSVFRV LWGLEILCFL AMDTRKRGPR EAGISANGGG  60
FKKSKQEMDS SGIGSKSKPC TKFFSTTGCP FGEGCHFLHY VPGGYSAVAQ MSNTGPAAPP  120
STRSMVGPPS MSNASLPTVK SRLCNKFNSA EGCKFGDKCH FAHGDWELGK PINLSFDDPQ  180
GVGRSSGRMG GRMMEPPVSA AAACFGATAT TKVSVDASLA SAIIGKGGVN SKQICRQTGV  240
KLVIREHESD LNLRNVELEG TFEQISQASA M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860219.11e-122PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-83C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4HVP91e-120A0A2I4HVP9_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGcassava4.1_012954m1e-116(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-38C3H family protein