PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0507s0001.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27210.1 Da    PI: 7.643
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0507s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +ri+n++ rqvtfskRr+g+lKKA+ELS+LCd++v v+ifsstgkly+++s
  Kalax.0507s0001.2.p  9 ERIDNTTSRQVTFSKRRKGLLKKAKELSILCDVQVGVMIFSSTGKLYDFAS 59
                         69***********************************************86 PP
2K-box81.91.5e-2781170897
                K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          ++++++ + +++e+a L+ ++++Lq+ +R++ Ge+L+sL+++eLq+Le+qLe  lk iR kK+e+++++ieel kke+ +q+en +Lr++
  Kalax.0507s0001.2.p  81 ENSNSEVKFWKNEAATLQHQLQSLQEDHRKVFGEELSSLTIQELQHLENQLEMNLKCIRMKKDEIMVAEIEELHKKERLIQQENLDLRNQ 170
                          3788999********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.151161IPR002100Transcription factor, MADS-box
CDDcd002653.36E-39278No hitNo description
SuperFamilySSF554555.62E-30291IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2483170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.10187183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIVIER IDNTTSRQVT FSKRRKGLLK KAKELSILCD VQVGVMIFSS TGKLYDFASN  60
ASIKSTIEQY NKLKGNQLHL ENSNSEVKFW KNEAATLQHQ LQSLQEDHRK VFGEELSSLT  120
IQELQHLENQ LEMNLKCIRM KKDEIMVAEI EELHKKERLI QQENLDLRNQ AVCYIKNTEV  180
HSAQAPSRVK AAPLHTRELC WEDDTLEHVQ LQLSQPQPQP QGSELSPGNI MMGLHLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-17187184MEF2C
5f28_B6e-17187184MEF2C
5f28_C6e-17187184MEF2C
5f28_D6e-17187184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060125.11e-79PREDICTED: MADS-box transcription factor 23 isoform X3
SwissprotA2RVQ57e-74AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A3Q0F1L07e-78A0A3Q0F1L0_VIGRR; MADS-box transcription factor 23-like isoform X3
STRINGXP_006472406.12e-77(Citrus sinensis)
STRINGGLYMA13G32810.11e-77(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-72AGAMOUS-like 21
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]