PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0507s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family BBR-BPC
Protein Properties Length: 306aa    MW: 34128 Da    PI: 10.6895
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0507s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind299.99.4e-92630530301
            GAGA_bind  30 ssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvg..vqvlsgtksidslqq 113
                          ++++er++++rern+a++e k+a+a+rdma l+rd+a+++r++a ++rd+++++l+l+++s++     ++p++  ++v+ g+k++++ qq
  Kalax.0507s0018.1.p   6 AILSERNEAMRERNMAIAEIKQAIAQRDMAILERDAAVTDRDHARMQRDDAIAQLQLKTDSMNtsivIHNPSEsaMSVSLGAKQMQMQQQ 95 
                          6789*****************************************************999998888855555411445567777776666 PP

            GAGA_bind 114 lse.........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.er....... 186
                          +++         p+ ++ a++ re       p ++  ++++  +k  + +r+k++kekk+ +++k   k+ +k +k++++ ++       
  Kalax.0507s0018.1.p  96 QQQqqqqrrqhlPNYSEVAFNPRE------VPFSDVFPQSTAGSKATRAKRGKHAKEKKTVSPNKAL-KPARKIAKKRTRvSNkqltats 178
                          444333333333333333333333......4444444555555555555555555555555554422.2222222222221114455667 PP

            GAGA_bind 187 ............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqga 264
                                       k+   + +l+ln+  lD+ +lPvP CsCtG+++ CYkWG GGWqSaCCtt++S+yPLP+++++r++R++grKmS+ga
  Kalax.0507s0018.1.p 179 hhssdsgrsgnlEKQIVLKGGLSLNELGLDDVNLPVPFCSCTGKPQSCYKWGKGGWQSACCTTALSMYPLPQMPNKRHSRMGGRKMSGGA 268
                          8889999988877777777899******************************************************************** PP

            GAGA_bind 265 fkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          f+kl+ +La+eGyd+  p+DLk++WAkHGtn+++tir
  Kalax.0507s0018.1.p 269 FTKLITRLASEGYDITVPIDLKTYWAKHGTNRYITIR 305
                          ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.9E-941305IPR010409GAGA-binding transcriptional activator
PfamPF062176.1E-806305IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDPFFAILSE RNEAMRERNM AIAEIKQAIA QRDMAILERD AAVTDRDHAR MQRDDAIAQL  60
QLKTDSMNTS IVIHNPSESA MSVSLGAKQM QMQQQQQQQQ QQRRQHLPNY SEVAFNPREV  120
PFSDVFPQST AGSKATRAKR GKHAKEKKTV SPNKALKPAR KIAKKRTRVS NKQLTATSHH  180
SSDSGRSGNL EKQIVLKGGL SLNELGLDDV NLPVPFCSCT GKPQSCYKWG KGGWQSACCT  240
TALSMYPLPQ MPNKRHSRMG GRKMSGGAFT KLITRLASEG YDITVPIDLK TYWAKHGTNR  300
YITIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465992.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012465997.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466004.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466013.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466019.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466025.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466035.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466042.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466050.15e-99PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016702980.12e-99PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_016707528.15e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707529.15e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707530.15e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707531.15e-99PREDICTED: protein BASIC PENTACYSTEINE6-like
TrEMBLA0A0D2Q5471e-97A0A0D2Q547_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KKL45e-98A0A1U8KKL4_GOSHI; protein BASIC PENTACYSTEINE6-like isoform X2
TrEMBLA0A1U8KYL51e-97A0A1U8KYL5_GOSHI; protein BASIC PENTACYSTEINE6-like
STRINGGorai.002G124900.12e-98(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.24e-79basic pentacysteine 6