PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0507s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 257aa    MW: 27891 Da    PI: 5.3182
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0507s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.9e-07330431
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCll 31
                         ++C+ +e   ++lfC  ++  lC++C +
  Kalax.0507s0024.1.p  3 TICDVCEGAAAILFCAADEAALCQSCDD 30
                         68******99****************86 PP
2zf-B_box27.28.2e-0978115437
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                           +C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Kalax.0507s0024.1.p  78 ARCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrkH 115
                          69**************************9996545556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.2136IPR000315B-box-type zinc finger
PROSITE profilePS501198.532128IPR000315B-box-type zinc finger
CDDcd000213.03E-4329No hitNo description
PfamPF006434.2E-5330IPR000315B-box-type zinc finger
PROSITE profilePS501199.39975120IPR000315B-box-type zinc finger
SMARTSM003363.0E-1075120IPR000315B-box-type zinc finger
PfamPF006434.0E-778115IPR000315B-box-type zinc finger
CDDcd000212.81E-779108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRTICDVCEG AAAILFCAAD EAALCQSCDD KVACLMLVGF WCEYMGTVFT DFDALVHMCN  60
KLASRHVRVR LAAPSAVARC DICENAPAFF YCEVDGTSLC LQCDMIVHVG GKRKHGRYLI  120
LRQKVEFPGG KPGQLEDPAS QPLDTGESNE GSKNATRDHQ QNHESSPMPI IDSNGDSNAK  180
RDTKMIDLNM KPQLILKPLV RPLICSSAGK AENLEVSDIH TPVCALTSLP SIMTLFIEIE  240
IGFQQPNQQT PNAASS*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889654.14e-84B-box zinc finger protein 18-like isoform X4
SwissprotC0SVM51e-63BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1R3GG332e-81A0A1R3GG33_COCAP; Zinc finger, B-box
TrEMBLA0A1R3HVT38e-82A0A1R3HVT3_COCAP; Zinc finger, B-box
STRINGVIT_04s0023g03030.t017e-82(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.31e-67DBB family protein