PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0514s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 360aa    MW: 40666.1 Da    PI: 7.0763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0514s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.2e-53101401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+++yL+kkv+g++++l +vi+e+d++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Kalax.0514s0014.1.p  10 VPPGFRFHPTDEELLNYYLRKKVSGEEIDL-DVIREIDVNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 98 
                          69****************************.9***************943444443456******************************* PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk+v+++ +++  gl+ktLvfy+grap+g+ktdW+mheyrl
  Kalax.0514s0014.1.p  99 RDKAVHHNgSSRRLGLRKTLVFYTGRAPHGQKTDWIMHEYRL 140
                          *******866778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-595168IPR003441NAC domain
PROSITE profilePS5100559.04510168IPR003441NAC domain
PfamPF023653.2E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSGSSGQLSV PPGFRFHPTD EELLNYYLRK KVSGEEIDLD VIREIDVNKL EPWDLKDKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAVHHNGSSR RLGLRKTLVF  120
YTGRAPHGQK TDWIMHEYRL DDHHNITHNT TLDHQEDDGW VVCRVFKKKN NPRSDYEQDL  180
KNPNTSKNDE DESLNQRAWP PSSYNNTNNG SSTPMILMQP PHMNYPSAII NTSMHLPQLF  240
SPEANVPTFM SPIITSNDNN NADVECSHSL LRLMSSSSSP AAASGLLSLN NNTGNSSDWS  300
FLDKLLATNN ISQHIQLLDH HHHYNAPPSF QLVDYVGASA HKTHLDCFGC ESDSLKYSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-54717117171NAC domain-containing protein 19
3swm_B8e-54717117171NAC domain-containing protein 19
3swm_C8e-54717117171NAC domain-containing protein 19
3swm_D8e-54717117171NAC domain-containing protein 19
3swp_A8e-54717117171NAC domain-containing protein 19
3swp_B8e-54717117171NAC domain-containing protein 19
3swp_C8e-54717117171NAC domain-containing protein 19
3swp_D8e-54717117171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316163.21e-129protein SOMBRERO
RefseqXP_011014561.11e-129PREDICTED: protein SOMBRERO-like
RefseqXP_011014569.11e-129PREDICTED: protein SOMBRERO-like
RefseqXP_024466050.11e-129protein SOMBRERO
SwissprotQ9MA171e-106SMB_ARATH; Protein SOMBRERO
TrEMBLA0A3N7HAQ91e-127A0A3N7HAQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18420.11e-128(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-88NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]