PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0514s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 262aa    MW: 29090.7 Da    PI: 9.3422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0514s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1365117155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+  hn+ Er RR++iN+ ++ Lr+llP +  ++s+++s  +++ ++ +YI +Lq
  Kalax.0514s0026.1.p  65 RKLHHNASERHRRKKINELYSSLRSLLPAS--EQSRRMSIPTTVARVLKYIPELQ 117
                          6789*************************6..5*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1662145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-1163121No hitNo description
PROSITE profilePS5088814.83164116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1465138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-1165117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1070122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLSVSSSSSA AMFGWPLEEA VYSYNMNHGF YDHTGGELAA AAHTDHPGNF APDGDRIDGK  60
SGERRKLHHN ASERHRRKKI NELYSSLRSL LPASEQSRRM SIPTTVARVL KYIPELQEEV  120
ARMEKRKQVM SKKMDKLRES VSSLSSKSTG PGHHGQEVTG REEEAKAQHM TMENSNNRSS  180
VSTSQVADRE VVIQISTVRV SVSEILSSLE GDGFQLINAS SSESHGGRLF LNLHLQKLDG  240
IRNAECQGLE KKLLFMVENK R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16378RRKLHHNASERHRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-45bHLH family protein