PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0516s0035.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 30180.1 Da    PI: 8.099
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0516s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.68.8e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr+g+ KKA+E+SvLCdaeva+iifs +gk++eys+
  Kalax.0516s0035.1.p  9 KRIENKINRQVTFSKRRTGLVKKAHEISVLCDAEVALIIFSGKGKMFEYST 59
                         79***********************************************96 PP
2K-box98.68.8e-33841795100
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                           g s ++ ++e+ + e+ kLk+++e Lqr++Rh lGed++sLs++eLq+Le+qL+++lk++R++Kn+l++e+i+elqkke+++qe+n+ L
  Kalax.0516s0035.1.p  84 MGASDHSPQEENITMEYHKLKSKLELLQRSHRHCLGEDVDSLSMRELQNLEHQLDTALKRVRARKNQLMHESISELQKKERAMQEQNNLL 173
                          4455788899******************************************************************************** PP

                K-box  95 rkklee 100
                          +k+++e
  Kalax.0516s0035.1.p 174 TKRVKE 179
                          *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-33281IPR002100Transcription factor, MADS-box
CDDcd002657.48E-41279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2889177IPR002487Transcription factor, K-box
PROSITE profilePS5129716.23193183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRTGLVK KAHEISVLCD AEVALIIFSG KGKMFEYSTD  60
SCMEKILERY ERHSYAERQH YQQMGASDHS PQEENITMEY HKLKSKLELL QRSHRHCLGE  120
DVDSLSMREL QNLEHQLDTA LKRVRARKNQ LMHESISELQ KKERAMQEQN NLLTKRVKEK  180
EKTLMGQQEE AHPHPWAVHH EHHHNHGATS LSSFHSSQPV PSLNAAFAHR GEADDGRMSP  240
NELDLTLEPI YSYHLGCYAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-21174173MEF2 CHIMERA
6byy_B5e-21174173MEF2 CHIMERA
6byy_C5e-21174173MEF2 CHIMERA
6byy_D5e-21174173MEF2 CHIMERA
6bz1_A6e-21174173MEF2 CHIMERA
6bz1_B6e-21174173MEF2 CHIMERA
6bz1_C6e-21174173MEF2 CHIMERA
6bz1_D6e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268210.11e-113apetala1
SwissprotQ6E6S71e-114AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A182BPB81e-109A0A182BPB8_9ROSI; APETALA1
STRINGVIT_01s0011g00100.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]