PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0522s0010.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 228aa    MW: 25211.2 Da    PI: 4.8513
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0522s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.6e-098302346
                         -HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                         +W++Ia+ ++ gRt++++k++w++
  Kalax.0522s0010.2.p  8 RWSLIAKQLP-GRTDNDVKNYWNT 30
                         4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.841136IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-14745IPR009057Homeodomain-like
SuperFamilySSF466891.95E-8739IPR009057Homeodomain-like
CDDcd001673.14E-7832No hitNo description
PfamPF002494.8E-7830IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKLERLSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVSMG IDPITHKPIS RVVTDCHNII  60
NLTTQAASYN RLRDQASLTT SNPCFFPSAP CFSDFNCQAL MQTYVPQSPT ASSSSSSCTV  120
NQPVESFPAS TAQVYSFSWI DHVLQDNWCI NDDLDQSQGG FSDMPVSAGL KLGEADAEKS  180
KTVGATCNPS EAYSSSCSVK TFVDNILDRD FEIMSDCPRL LDESFEY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.13e-22myb domain protein 103