PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0522s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 98aa    MW: 10954.5 Da    PI: 9.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0522s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.1e-0729642054
                         HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         +++L++llP+ + +++s+K+s   +L+++++YI+ L
  Kalax.0522s0028.1.p 29 MSKLQQLLPElRNRGRSEKVSARKVLQETCNYIRTL 64
                         789*******777*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.664964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-72583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-62868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-42964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSRRQSRHQ SSSSESSLRI TGEQILGLMS KLQQLLPELR NRGRSEKVSA RKVLQETCNY  60
IRTLREEVDD LSLRLTELLA TIDADSPEAA VIRSLLS*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543767.11e-35transcription factor PRE5
RefseqXP_007151219.11e-35hypothetical protein PHAVU_004G027700g
RefseqXP_014507201.11e-35transcription factor PRE5
RefseqXP_017438920.11e-35PREDICTED: transcription factor PRE5
RefseqXP_027923623.11e-35transcription factor PRE5
RefseqXP_028196915.11e-35transcription factor PRE5-like
RefseqXP_028217318.11e-35transcription factor PRE5-like
SwissprotQ9LJX18e-32PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G9I4F91e-34A0A2G9I4F9_9LAMI; Uncharacterized protein
STRINGGLYMA13G05280.15e-35(Glycine max)
STRINGGLYMA19G02510.15e-35(Glycine max)
STRINGXP_007151219.15e-35(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-32bHLH family protein